Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00282 ATGAGATTCATTGCTGAGTCAACTCAAAAGCGAGTTCCGTGTTATCGTGTACTTCATGAAAATGGGGACATTCTTACATCAAACAATTTCATACAGTTGAGGAAAGATGTAGCGATTAAGATGTACAAAGACATGATTACCCTTCAAACAATGGACACCATATTGTACGAAGCACAAAGACAAGGAAGAATCTCATTTTACTTAACTTCATCGGGAGAAGAAGCCATTGCCATTGCTTCTGCAGCTGCACTTCTACCCGACGACGTCGTTTTGGCTCAGGGGGATTTCCACGCGGCATTGAACTTCGCAGCCGTATTAGGAGCGCCGGTGATATTCATCTGCCGGAACAACGGCTGGGCCATCAGCACTTCCGTCCAAGAACAATTCCGAAGCGACGGCGTGGTGGTAAAAGGTCAGGGCTATGGAATCCGAAGCATCCGAGTCGACGGAAACGATGCCCTAGCCGTTTACAGTGCGGTTCGCAGAGCTCGATCCATGGCGGTTAAAGAGCAAATGCCGATTCTCATCGAGGCTTTAACTTACAGAGTGGGCCACCATTCCACCTCCGATGATTCCAGTAAGTATCGCGCCGTTGATGAGATTCAGTACTGGAAAATGGAGAGGAATCCTGTGGATCGCTTTACTAAATGGCTTTTCAATAATGGATGGTTGAATCAAGAACACGACTCCAATCACAAATCTACCGTCAGAAAACAGTTGTTGCAAGCAATTCAGAATGCAGAGAAAACAGAGAAGCCTCCAGTTTCAGAGTTGTTTAATGATGTTTATGATCATTTACCTAAAAACCTTGAAGAACAAGAGGAAGTATTAAGGCAAACAATTAAGAGGTATCCTCAAGATTATCCTTCTGATGTTCCTCTTTAG 885 44.52 MRFIAESTQKRVPCYRVLHENGDILTSNNFIQLRKDVAIKMYKDMITLQTMDTILYEAQRQGRISFYLTSSGEEAIAIASAAALLPDDVVLAQGDFHAALNFAAVLGAPVIFICRNNGWAISTSVQEQFRSDGVVVKGQGYGIRSIRVDGNDALAVYSAVRRARSMAVKEQMPILIEALTYRVGHHSTSDDSSKYRAVDEIQYWKMERNPVDRFTKWLFNNGWLNQEHDSNHKSTVRKQLLQAIQNAEKTEKPPVSELFNDVYDHLPKNLEEQEEVLRQTIKRYPQDYPSDVPL 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7110301 7121541 + Lsi08G002820.1 Lsi08g00282 668208

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00282 294 CDD TPP_E1_PDC_ADC_BCADC 41 247 - -
Lsi08g00282 294 Pfam Dehydrogenase E1 component 92 255 IPR001017 GO:0016624
Lsi08g00282 294 Gene3D - 92 292 - -
Lsi08g00282 294 Gene3D - 1 91 - -
Lsi08g00282 294 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA 2, MITOCHONDRIAL 93 294 - -
Lsi08g00282 294 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA 2, MITOCHONDRIAL 1 93 - -
Lsi08g00282 294 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL 93 294 - -
Lsi08g00282 294 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL 1 93 - -
Lsi08g00282 294 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 12 289 IPR029061 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00282 K00166 BCKDHA, bkdA1; 2-oxoisovalerate dehydrogenase E1 component alpha subunit [EC:1.2.4.4] - csv:101216977 368.622
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01161 Lsi-Chr1:9754300 Lsi08g00282 Lsi-Chr8:7110301 2.38E-27 dispersed
Lsi08g00282 Lsi-Chr8:7110301 Lsi08g00731 Lsi-Chr8:15660746 5.94E-24 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1174 . . . . . . . . . . Cma01g01017 . Car01g00898 . . . . . . . . . . . . . . . . . . . Cone7ag1492 . . . . . . Blo17g00231 . . Bda13g01545 . Bpe14g00320 . Bma02g00289 . Cmo01g01059 . . . Car05g00806 . . . . . . . . . . . . . . . . . Lsi08g00282 . Chy03g00808 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001880 3 2 2 2 2 2 3 2 2 2 2 2 3 2 2 3 2 3 2 2 2 3 1 2 2 2 2 3 2 2 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00282 Lsi_Chr08 FPKM 2.268185 2.044493 0.713605 0.89944 1.748812 1.415012 1.408179 0.240874 0.0 0.0