Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00283 ATGTCTTCCGCACCGTCTTCGAGTCAACCGGAGTTTGATTACTTGTTTAAGTTGCTGTTGATCGGGGACTCTGGTGTAGGGAAGAGTACTCTTCTTTTGCGCTTCACTTCCGATTCCTTTGAGGATCTTTCTCCCACTATTGGTGTGGATTTCAAGATTAAGCATGTTACAGTTGGGGGCAAGAAGTTGAAGCTTGCAATATGGGACACAGCTGGGCAGGAGAGGTTTCGGACGCTAACAGGTTCATATTACAGAGGAGCTCAAGGAATCATTATGGTGTATGATGTGACCCGGCGAGAGACATTCACAAATCTGTCTGACATATGGGCTAAAGAAATTGATCTGTACTCAACAAATCAGGATTGCATTAAGATGCTCGTCGGAAACAAAGTGGATAAGGAAAGTGAACGGGTAGTCAGTAAAAAAGAGGGAATTGACTTTGCTCGAGAATATGGATGCCTATTTCTCGAATGCAGTGCGAAAACTCGGGTCAATGTGGAGCAATGCTTTGATGAGCTTGTGTTGAAGATATTGGACACGCCCAGTCTTTTGGCTGATGGTTCAACAGGTTTAAAAAAGAATATCTTCAAAGAGAAACCTCCCGAATCGAATGCATCGGCCGGTGGCTGCTGCTCATATTGA 642 44.39 MSSAPSSSQPEFDYLFKLLLIGDSGVGKSTLLLRFTSDSFEDLSPTIGVDFKIKHVTVGGKKLKLAIWDTAGQERFRTLTGSYYRGAQGIIMVYDVTRRETFTNLSDIWAKEIDLYSTNQDCIKMLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFDELVLKILDTPSLLADGSTGLKKNIFKEKPPESNASAGGCCSY 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7122120 7127750 - Lsi08G002830.1 Lsi08g00283 668209

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00283 213 PANTHER LD21953P-RELATED 7 212 - -
Lsi08g00283 213 SMART rab_sub_5 16 180 - -
Lsi08g00283 213 Gene3D - 9 211 IPR027417 -
Lsi08g00283 213 CDD Rab18 16 177 - -
Lsi08g00283 213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 184 IPR027417 -
Lsi08g00283 213 ProSiteProfiles small GTPase Rho family profile. 9 178 - -
Lsi08g00283 213 SMART arf_sub_2 4 181 - -
Lsi08g00283 213 TIGRFAM small_GTP: small GTP-binding protein domain 14 173 IPR005225 GO:0005525
Lsi08g00283 213 PANTHER BNAA05G18680D PROTEIN 7 212 - -
Lsi08g00283 213 SMART ran_sub_2 21 213 - -
Lsi08g00283 213 SMART rho_sub_3 18 180 IPR001806 GO:0003924|GO:0005525
Lsi08g00283 213 ProSiteProfiles small GTPase Rab1 family profile. 11 211 - -
Lsi08g00283 213 PRINTS Transforming protein P21 ras signature 155 177 - -
Lsi08g00283 213 PRINTS Transforming protein P21 ras signature 56 78 - -
Lsi08g00283 213 PRINTS Transforming protein P21 ras signature 120 133 - -
Lsi08g00283 213 PRINTS Transforming protein P21 ras signature 16 37 - -
Lsi08g00283 213 PRINTS Transforming protein P21 ras signature 38 54 - -
Lsi08g00283 213 Pfam Ras family 17 178 IPR001806 GO:0003924|GO:0005525
Lsi08g00283 213 ProSiteProfiles small GTPase Ras family profile. 8 213 IPR001806 GO:0003924|GO:0005525
Lsi08g00283 213 SMART ras_sub_4 13 180 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00283 K07910 RAB18; Ras-related protein Rab-18 - csv:101216584 423.705
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00283 Lsi-Chr8:7122120 Lsi08g00682 Lsi-Chr8:15149459 7.04E-98 dispersed
Lsi08g00283 Lsi-Chr8:7122120 Lsi03g01986 Lsi-Chr3:31241814 5.09E-104 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1130 Blo01g01603 Blo12g01115 Bda01g00478 . . . . . Cmo05g00314 Cmo12g00355 Cma01g01018 . Car01g00899 Car12g00381 Sed11g1094 . Cpe07g00360 Bhi04g00141 Tan02g2081 Cmetu03g1137 . Hepe10g0160 . Lcy13g1907 Cla08g01417 Cam08g1895 Cec08g1473 Cco08g1606 Clacu08g1588 . Cre08g1372 Cone4ag1978 . Cone17ag1410 Cone20ag0072 . . Chy04g00409 Cme03g00439 . Blo18g00229 . Bda13g01547 . . . Bma02g00291 . Cmo01g01060 . Cma12g00404 Cma05g00312 Car05g00808 Car09g00086 Cpe11g00260 Cpe02g00066 . . . . . . . . . . . . . . Lsi08g00283 Csa02g02140 Chy03g01379 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000246 3 6 3 2 3 5 8 5 4 5 4 5 7 5 5 6 5 9 7 5 5 5 4 5 4 5 5 6 10 3 154
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00283 Lsi_Chr08 FPKM 9.190852 8.536113 12.854021 12.738274 11.104958 11.026257 12.482191 12.368342 11.41432 13.957294