Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00289 ATGGATGTCGACTCCGGCGAAGCAGCGGTGACAGAGGCGGGGGAAGCTCATGAAGTTGGCAACGGCGGTGGCGGTGGCAGCGGGAACGGATCGAATTCCGGCGAAGAAGATAAAGGGTCATCTTTGTTGTTGTTTGAAGATGGTGAGAAGAATTTTGGTGGGAACAGGTGGCCAAGACAAGAGACTTTGGCTTTGTTGAAGATAAGATCTGATATGGATGCAATTTTTAGAGATGCAACTCATAAAGCTCCATTGTGGGATGAAGTTTCAAGGAAATTAGGAGAGCTTGGATTCAATCGAACTCCAAAGAAATGCAAGGAGAAATTTGAGAATGTTTATAAGTATCACAAAAGAACCAAAGATGTTCGAAGTGGGAAATCCGATAATAGCAAAAAAGTTTATAGATTTTCAGATGAATTGGAAGCTTTTGATCATCATAGCCATCACCAAAATCACATTTTATTTCAATCTCACCACCACCAGCCGCCGCCACCACTGCCGCCACCTTTGCCGCCAGTTCCTCAAACAACCACGACAACGACACCACCGTCGACTAAAACAATCAACTCTACTGTTCCATCCACCATGAATAACACTACAACAAACAACTCCTCTTTGCCACCAAAGTCCTCTAATAACCCTCTTTCCAATTTGCCAAACATGGCTGCCAATGTGATGTTTTCGAGCTCCACGTCATCGTCGACGGCGTCGGAGGAAGATCCGTTTCGAAGTAGTAGGAGGAGGAAGAAGAGGAAGTGGAGTGATTTCTTCTTGAGGTTAACAAAGGAGGTAATAGAGAAGCAAGAAGGGCTTCAGTTAAAATTCTTAGAAGCCTTGGAGAGAATAGAGAATCAAAGGAAATTGAGAGATGAAGCATGGAGAATGAAAGAAATGACAAGGGTTAATCAAGAACATAAAGTTTTAGTTCAAGAGATGTCCATGGCCGCCGCGAAAGATGCGGCCGTCGTCGCATTTTTGCAAAAGATAGCTCCATCTTCTTCTCCGACACCACCACCACCGACGACGACGACGACTCAGTCGCAGAACAACGAGAATAACGGAAAGATGATGACGGTAATCTCGACGATGACAAATGGAAAGGTGAGTAGCATTGTAGGAAGCCCTTCAAGATGGCCAAAAGGTGAAATTGAAGCATTGATAAGGCTAAGGACAGAAATGGAAATGAAATATCAAGAGAATGGGCCAAAAGGGTTATTATGGGAAGAGATTTCAACAGCAATGAGAGGGCTTGGATACAATAGAAGCTCAAAGAGATGCAAAGAGAAATGGGAAAACATAAACAAATACTTCAAAAAAGTGAAAGATAGCAACAAGAAGAGGCCAGAAGATTCCAAGACATGTCCTTATTTTCATCAATTAGATGCTCTTTATAGAGAGAAAGAAAAAAATATGAATAATTTTGATATCAATAGCCAAATGGAGCCATTGATGGTTGAACCAGAACAACAATGGCCACCTCCATTTCAAGCCAATAATCAAATCATGGGAAATTTACAAAGAATAAATGGTGAAGGAAATCAAGAAGAAGAAGAAGAAGAAGAAGATGATGATGATGATGAAGAAGAAGATGGAGGAAGTAGTAGCACAGATGTGGAAGATTGA 1623 41.9 MDVDSGEAAVTEAGEAHEVGNGGGGGSGNGSNSGEEDKGSSLLLFEDGEKNFGGNRWPRQETLALLKIRSDMDAIFRDATHKAPLWDEVSRKLGELGFNRTPKKCKEKFENVYKYHKRTKDVRSGKSDNSKKVYRFSDELEAFDHHSHHQNHILFQSHHHQPPPPLPPPLPPVPQTTTTTTPPSTKTINSTVPSTMNNTTTNNSSLPPKSSNNPLSNLPNMAANVMFSSSTSSSTASEEDPFRSSRRRKKRKWSDFFLRLTKEVIEKQEGLQLKFLEALERIENQRKLRDEAWRMKEMTRVNQEHKVLVQEMSMAAAKDAAVVAFLQKIAPSSSPTPPPPTTTTTQSQNNENNGKMMTVISTMTNGKVSSIVGSPSRWPKGEIEALIRLRTEMEMKYQENGPKGLLWEEISTAMRGLGYNRSSKRCKEKWENINKYFKKVKDSNKKRPEDSKTCPYFHQLDALYREKEKNMNNFDINSQMEPLMVEPEQQWPPPFQANNQIMGNLQRINGEGNQEEEEEEEDDDDDEEEDGGSSSTDVED 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7387147 7389844 + Lsi08G002890.1 Lsi08g00289 668215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00289 540 ProSiteProfiles Myb-like domain profile. 376 434 IPR001005 -
Lsi08g00289 540 MobiDBLite consensus disorder prediction 179 239 - -
Lsi08g00289 540 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 9 533 - -
Lsi08g00289 540 MobiDBLite consensus disorder prediction 1 43 - -
Lsi08g00289 540 MobiDBLite consensus disorder prediction 492 510 - -
Lsi08g00289 540 CDD GT1 376 441 - -
Lsi08g00289 540 SMART sant 53 115 IPR001005 -
Lsi08g00289 540 SMART sant 374 436 IPR001005 -
Lsi08g00289 540 Gene3D - 378 439 - -
Lsi08g00289 540 Gene3D - 57 118 - -
Lsi08g00289 540 MobiDBLite consensus disorder prediction 489 540 - -
Lsi08g00289 540 PANTHER - 9 533 - -
Lsi08g00289 540 MobiDBLite consensus disorder prediction 330 353 - -
Lsi08g00289 540 Pfam Myb/SANT-like DNA-binding domain 376 463 IPR044822 -
Lsi08g00289 540 Pfam Myb/SANT-like DNA-binding domain 55 136 IPR044822 -
Lsi08g00289 540 MobiDBLite consensus disorder prediction 150 250 - -
Lsi08g00289 540 MobiDBLite consensus disorder prediction 513 540 - -
Lsi08g00289 540 CDD GT1 55 120 - -
Lsi08g00289 540 ProSiteProfiles Myb-like domain profile. 49 113 IPR001005 -
Lsi08g00289 540 MobiDBLite consensus disorder prediction 160 178 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00289 Lsi-Chr8:7387147 Lsi10g00706 Lsi-Chr10:9874458 3.41E-128 dispersed
Lsi08g00289 Lsi-Chr8:7387147 Lsi08g00290 Lsi-Chr8:7501757 3.34E-13 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25716 PF13837 Myb_DNA-bind_4 3.00E-22 CL0123 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00289 - - csv:101207491 749.969