Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00290 ATGCTTGGGGACTCCACTACTTCCGTCTTGGGTGGCGGCGCCGGAGGAGGAGACGCCGCCGTGCCGGAGACGACTCATCGTCACGATGGGTTGATGGGTGACATGGAGGAGAGTAATAACAATTCTGGTGAAGATGAGAGAGGGAGAAGCGGCGGTGGCGGAGGAGACGACGGTGACCGGAGCTTCGGCGGAAACCGGTGGCCGAGACAAGAAACTTTAGCTCTCTTGAAAATACGGTCAGAAATGGACGTGGCTTTTCGAGATGCAAGCGTTAAAGGCCCTTTGTGGGAACAAATTTCCAGTTCAATCATTTTCACTTCATCTCAAGTGATTTATGCTTTTCTTTTTTTGTTTTCTTGGGAATCTCTAATCAAACTAAAATCCCAATTCAGTGTCACTGAAATTCAAGAAGAGAAATTGGGGGAGCTTGGGTATCATCGAAGTGCAAAAAAATGCAAGGAGAAATTTGAGAATGTTTACAAATATCACAAAAGAACTAAAGAAGTTAGAAGTGGGAAACCAGATAGCAAAACTTATAAGTTCTTTGAACAATTAGAAGCTCTTGAGAATCACCCTCCTCTTAATTTCCACTCCCATTTGTCTAAACCAACTCCTCCGCCCCAGCCGCCGCCACCACCACCACCTACCGCCGTCATTTCCCCCATTCCTTCAACTACTGTTCCATCCACCACTCTACCTCACTTGATGAACTTATCATTCTCTCAACCAAACCCCACAATTCACCTCCCATCTCCTCCGCCCCCTCCTGCTCCGTTGCCATTGAATAACCCTACGAGCTTACCCGCCACCGTCCCTCCTTCCGTGCCGTTTCAAATCAATGTCTCTTCGGCGGGAGTGGGGTTTCAGAGCATTGAAGCGGATCTCATCTCGAACTCGACATCTGATGATGTCAACTCGTCGACATCATCAGATGAAGCATCGAGACGGAGGAGGAAGAAGAGGAAATGGAAGGACTTTTTTGAGAGATTGATGAAGGAAGTGATTCAAAAGCAAGAGGAAATGCAAAAGAGATTCTTGGAAGCAATTGAGAAGAGGGAGCAAGAGAGAGTTGTGAGAGAAGAAGCTTGGAGGATGCAAGAGATGGCCAAAATCAATAGAGAAAGAGAGATTCTAGCTCAAGAAAGATCAATGGCAGCTGCGAAAGACGCCGCCATTACATCGTTCCTTCAAAAAATAACTGAATCCCAACACAACAATAACAACAACAACCCATCACAACCGTGGCCGCCGCCGCCGCCACCACCATCCCAACAACAACAACCATCAATCCCAACGTCAAATCCAACACCAGTCGTGCAACCGTCACCGCCGCCGCCGCCGCCGCCACCCGCACCACAAGCTTCCACATTGCAAGTTGTTGTTCCCAATTCCACCCCACAAAAGGTGGGGAACAACAATGAGTTGTTGCAAATGGAGATTATGAAAATGGATCATAATGGTGGGGAGAATTATAGCATTAGCCCAGCTGCAAGCTCATCAAGATGGCCAAAAGTGGAAGTTCAAGCTCTTATCCAATTGAGAACAAACCTTGAAACCAAATATCAAGAGAATGGGCCAAAAGGGCCTTTATGGGAAGAGATTTCATCAGCCATGAAGAAACTTGGGTACAATAGAAATGCAAAGAGGTGCAAAGAGAAGTGGGAAAACATTAACAAATACTTCAAGAAAGTGAAGGAAAGTAGAAAAACAAGGCCTGAGGATTCCAAGACTTGCCCTTACTTTCACCAGCTTGATGCTTTGTATAAGGAGAAGAGCAGCAACAACACCAACAACATAATCGGATGTCCGACGCCGATTATGCAGCATCAACAACAGCCATTGATGGTTCGCCCCGAGCAACAATGGCCTCCCCAACAAGAGATTGCTCGCCCCGACTCGGGAAACGAAGAGATAGAGAGCGAACCAATGGATCGTGATGATAAAGACGACGATGACGAAGATGAAGATGAAGAGGACGAAGGTGGAGGGAACTATGAGATTGTGGCGAGCAAACCGGCTTCAGTGAGTGCTGCAGAGTGA 2040 47.16 MLGDSTTSVLGGGAGGGDAAVPETTHRHDGLMGDMEESNNNSGEDERGRSGGGGGDDGDRSFGGNRWPRQETLALLKIRSEMDVAFRDASVKGPLWEQISSSIIFTSSQVIYAFLFLFSWESLIKLKSQFSVTEIQEEKLGELGYHRSAKKCKEKFENVYKYHKRTKEVRSGKPDSKTYKFFEQLEALENHPPLNFHSHLSKPTPPPQPPPPPPPTAVISPIPSTTVPSTTLPHLMNLSFSQPNPTIHLPSPPPPPAPLPLNNPTSLPATVPPSVPFQINVSSAGVGFQSIEADLISNSTSDDVNSSTSSDEASRRRRKKRKWKDFFERLMKEVIQKQEEMQKRFLEAIEKREQERVVREEAWRMQEMAKINREREILAQERSMAAAKDAAITSFLQKITESQHNNNNNNPSQPWPPPPPPPSQQQQPSIPTSNPTPVVQPSPPPPPPPPAPQASTLQVVVPNSTPQKVGNNNELLQMEIMKMDHNGGENYSISPAASSSRWPKVEVQALIQLRTNLETKYQENGPKGPLWEEISSAMKKLGYNRNAKRCKEKWENINKYFKKVKESRKTRPEDSKTCPYFHQLDALYKEKSSNNTNNIIGCPTPIMQHQQQPLMVRPEQQWPPQQEIARPDSGNEEIESEPMDRDDKDDDDEDEDEEDEGGGNYEIVASKPASVSAAE 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7501757 7505066 - Lsi08G002900.1 Lsi08g00290 668216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00290 679 PANTHER - 27 101 - -
Lsi08g00290 679 PANTHER - 139 672 - -
Lsi08g00290 679 MobiDBLite consensus disorder prediction 22 54 - -
Lsi08g00290 679 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 27 101 - -
Lsi08g00290 679 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 139 672 - -
Lsi08g00290 679 MobiDBLite consensus disorder prediction 619 679 - -
Lsi08g00290 679 MobiDBLite consensus disorder prediction 199 221 - -
Lsi08g00290 679 SMART sant 63 162 IPR001005 -
Lsi08g00290 679 SMART sant 498 560 IPR001005 -
Lsi08g00290 679 MobiDBLite consensus disorder prediction 246 267 - -
Lsi08g00290 679 CDD GT1 65 167 - -
Lsi08g00290 679 Gene3D - 67 165 - -
Lsi08g00290 679 ProSiteProfiles Myb-like domain profile. 494 558 IPR001005 -
Lsi08g00290 679 Pfam Myb/SANT-like DNA-binding domain 500 587 IPR044822 -
Lsi08g00290 679 Pfam Myb/SANT-like DNA-binding domain 137 188 IPR044822 -
Lsi08g00290 679 MobiDBLite consensus disorder prediction 411 455 - -
Lsi08g00290 679 Coils Coil 324 355 - -
Lsi08g00290 679 MobiDBLite consensus disorder prediction 222 245 - -
Lsi08g00290 679 MobiDBLite consensus disorder prediction 193 267 - -
Lsi08g00290 679 MobiDBLite consensus disorder prediction 402 456 - -
Lsi08g00290 679 PRINTS Proline rich extensin signature 198 214 - -
Lsi08g00290 679 PRINTS Proline rich extensin signature 234 255 - -
Lsi08g00290 679 PRINTS Proline rich extensin signature 260 276 - -
Lsi08g00290 679 PRINTS Proline rich extensin signature 411 423 - -
Lsi08g00290 679 PRINTS Proline rich extensin signature 221 233 - -
Lsi08g00290 679 CDD GT1 500 565 - -
Lsi08g00290 679 MobiDBLite consensus disorder prediction 298 320 - -
Lsi08g00290 679 MobiDBLite consensus disorder prediction 639 663 - -
Lsi08g00290 679 Gene3D - 502 563 - -
Lsi08g00290 679 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02220 Lsi-Chr3:33225176 Lsi08g00290 Lsi-Chr8:7501757 1.18E-08 dispersed
Lsi08g00290 Lsi-Chr8:7501757 Lsi10g00706 Lsi-Chr10:9874458 2.61E-16 dispersed
Lsi08g00289 Lsi-Chr8:7387147 Lsi08g00290 Lsi-Chr8:7501757 3.34E-13 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25717 PF13837 Myb_DNA-bind_4 1.90E-21 CL0123 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00290 - - csv:101205810 880.552