Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi08g00290 | ATGCTTGGGGACTCCACTACTTCCGTCTTGGGTGGCGGCGCCGGAGGAGGAGACGCCGCCGTGCCGGAGACGACTCATCGTCACGATGGGTTGATGGGTGACATGGAGGAGAGTAATAACAATTCTGGTGAAGATGAGAGAGGGAGAAGCGGCGGTGGCGGAGGAGACGACGGTGACCGGAGCTTCGGCGGAAACCGGTGGCCGAGACAAGAAACTTTAGCTCTCTTGAAAATACGGTCAGAAATGGACGTGGCTTTTCGAGATGCAAGCGTTAAAGGCCCTTTGTGGGAACAAATTTCCAGTTCAATCATTTTCACTTCATCTCAAGTGATTTATGCTTTTCTTTTTTTGTTTTCTTGGGAATCTCTAATCAAACTAAAATCCCAATTCAGTGTCACTGAAATTCAAGAAGAGAAATTGGGGGAGCTTGGGTATCATCGAAGTGCAAAAAAATGCAAGGAGAAATTTGAGAATGTTTACAAATATCACAAAAGAACTAAAGAAGTTAGAAGTGGGAAACCAGATAGCAAAACTTATAAGTTCTTTGAACAATTAGAAGCTCTTGAGAATCACCCTCCTCTTAATTTCCACTCCCATTTGTCTAAACCAACTCCTCCGCCCCAGCCGCCGCCACCACCACCACCTACCGCCGTCATTTCCCCCATTCCTTCAACTACTGTTCCATCCACCACTCTACCTCACTTGATGAACTTATCATTCTCTCAACCAAACCCCACAATTCACCTCCCATCTCCTCCGCCCCCTCCTGCTCCGTTGCCATTGAATAACCCTACGAGCTTACCCGCCACCGTCCCTCCTTCCGTGCCGTTTCAAATCAATGTCTCTTCGGCGGGAGTGGGGTTTCAGAGCATTGAAGCGGATCTCATCTCGAACTCGACATCTGATGATGTCAACTCGTCGACATCATCAGATGAAGCATCGAGACGGAGGAGGAAGAAGAGGAAATGGAAGGACTTTTTTGAGAGATTGATGAAGGAAGTGATTCAAAAGCAAGAGGAAATGCAAAAGAGATTCTTGGAAGCAATTGAGAAGAGGGAGCAAGAGAGAGTTGTGAGAGAAGAAGCTTGGAGGATGCAAGAGATGGCCAAAATCAATAGAGAAAGAGAGATTCTAGCTCAAGAAAGATCAATGGCAGCTGCGAAAGACGCCGCCATTACATCGTTCCTTCAAAAAATAACTGAATCCCAACACAACAATAACAACAACAACCCATCACAACCGTGGCCGCCGCCGCCGCCACCACCATCCCAACAACAACAACCATCAATCCCAACGTCAAATCCAACACCAGTCGTGCAACCGTCACCGCCGCCGCCGCCGCCGCCACCCGCACCACAAGCTTCCACATTGCAAGTTGTTGTTCCCAATTCCACCCCACAAAAGGTGGGGAACAACAATGAGTTGTTGCAAATGGAGATTATGAAAATGGATCATAATGGTGGGGAGAATTATAGCATTAGCCCAGCTGCAAGCTCATCAAGATGGCCAAAAGTGGAAGTTCAAGCTCTTATCCAATTGAGAACAAACCTTGAAACCAAATATCAAGAGAATGGGCCAAAAGGGCCTTTATGGGAAGAGATTTCATCAGCCATGAAGAAACTTGGGTACAATAGAAATGCAAAGAGGTGCAAAGAGAAGTGGGAAAACATTAACAAATACTTCAAGAAAGTGAAGGAAAGTAGAAAAACAAGGCCTGAGGATTCCAAGACTTGCCCTTACTTTCACCAGCTTGATGCTTTGTATAAGGAGAAGAGCAGCAACAACACCAACAACATAATCGGATGTCCGACGCCGATTATGCAGCATCAACAACAGCCATTGATGGTTCGCCCCGAGCAACAATGGCCTCCCCAACAAGAGATTGCTCGCCCCGACTCGGGAAACGAAGAGATAGAGAGCGAACCAATGGATCGTGATGATAAAGACGACGATGACGAAGATGAAGATGAAGAGGACGAAGGTGGAGGGAACTATGAGATTGTGGCGAGCAAACCGGCTTCAGTGAGTGCTGCAGAGTGA | 2040 | 47.16 | MLGDSTTSVLGGGAGGGDAAVPETTHRHDGLMGDMEESNNNSGEDERGRSGGGGGDDGDRSFGGNRWPRQETLALLKIRSEMDVAFRDASVKGPLWEQISSSIIFTSSQVIYAFLFLFSWESLIKLKSQFSVTEIQEEKLGELGYHRSAKKCKEKFENVYKYHKRTKEVRSGKPDSKTYKFFEQLEALENHPPLNFHSHLSKPTPPPQPPPPPPPTAVISPIPSTTVPSTTLPHLMNLSFSQPNPTIHLPSPPPPPAPLPLNNPTSLPATVPPSVPFQINVSSAGVGFQSIEADLISNSTSDDVNSSTSSDEASRRRRKKRKWKDFFERLMKEVIQKQEEMQKRFLEAIEKREQERVVREEAWRMQEMAKINREREILAQERSMAAAKDAAITSFLQKITESQHNNNNNNPSQPWPPPPPPPSQQQQPSIPTSNPTPVVQPSPPPPPPPPAPQASTLQVVVPNSTPQKVGNNNELLQMEIMKMDHNGGENYSISPAASSSRWPKVEVQALIQLRTNLETKYQENGPKGPLWEEISSAMKKLGYNRNAKRCKEKWENINKYFKKVKESRKTRPEDSKTCPYFHQLDALYKEKSSNNTNNIIGCPTPIMQHQQQPLMVRPEQQWPPQQEIARPDSGNEEIESEPMDRDDKDDDDEDEDEEDEGGGNYEIVASKPASVSAAE | 679 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 7501757 | 7505066 | - | Lsi08G002900.1 | Lsi08g00290 | 668216 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi08g00290 | 679 | PANTHER | - | 27 | 101 | - | - | |
Lsi08g00290 | 679 | PANTHER | - | 139 | 672 | - | - | |
Lsi08g00290 | 679 | MobiDBLite | consensus disorder prediction | 22 | 54 | - | - | |
Lsi08g00290 | 679 | PANTHER | DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN | 27 | 101 | - | - | |
Lsi08g00290 | 679 | PANTHER | DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN | 139 | 672 | - | - | |
Lsi08g00290 | 679 | MobiDBLite | consensus disorder prediction | 619 | 679 | - | - | |
Lsi08g00290 | 679 | MobiDBLite | consensus disorder prediction | 199 | 221 | - | - | |
Lsi08g00290 | 679 | SMART | sant | 63 | 162 | IPR001005 | - | |
Lsi08g00290 | 679 | SMART | sant | 498 | 560 | IPR001005 | - | |
Lsi08g00290 | 679 | MobiDBLite | consensus disorder prediction | 246 | 267 | - | - | |
Lsi08g00290 | 679 | CDD | GT1 | 65 | 167 | - | - | |
Lsi08g00290 | 679 | Gene3D | - | 67 | 165 | - | - | |
Lsi08g00290 | 679 | ProSiteProfiles | Myb-like domain profile. | 494 | 558 | IPR001005 | - | |
Lsi08g00290 | 679 | Pfam | Myb/SANT-like DNA-binding domain | 500 | 587 | IPR044822 | - | |
Lsi08g00290 | 679 | Pfam | Myb/SANT-like DNA-binding domain | 137 | 188 | IPR044822 | - | |
Lsi08g00290 | 679 | MobiDBLite | consensus disorder prediction | 411 | 455 | - | - | |
Lsi08g00290 | 679 | Coils | Coil | 324 | 355 | - | - | |
Lsi08g00290 | 679 | MobiDBLite | consensus disorder prediction | 222 | 245 | - | - | |
Lsi08g00290 | 679 | MobiDBLite | consensus disorder prediction | 193 | 267 | - | - | |
Lsi08g00290 | 679 | MobiDBLite | consensus disorder prediction | 402 | 456 | - | - | |
Lsi08g00290 | 679 | PRINTS | Proline rich extensin signature | 198 | 214 | - | - | |
Lsi08g00290 | 679 | PRINTS | Proline rich extensin signature | 234 | 255 | - | - | |
Lsi08g00290 | 679 | PRINTS | Proline rich extensin signature | 260 | 276 | - | - | |
Lsi08g00290 | 679 | PRINTS | Proline rich extensin signature | 411 | 423 | - | - | |
Lsi08g00290 | 679 | PRINTS | Proline rich extensin signature | 221 | 233 | - | - | |
Lsi08g00290 | 679 | CDD | GT1 | 500 | 565 | - | - | |
Lsi08g00290 | 679 | MobiDBLite | consensus disorder prediction | 298 | 320 | - | - | |
Lsi08g00290 | 679 | MobiDBLite | consensus disorder prediction | 639 | 663 | - | - | |
Lsi08g00290 | 679 | Gene3D | - | 502 | 563 | - | - | |
Lsi08g00290 | 679 | MobiDBLite | consensus disorder prediction | 1 | 66 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g02220 | Lsi-Chr3:33225176 | Lsi08g00290 | Lsi-Chr8:7501757 | 1.18E-08 | dispersed | |
Lsi08g00290 | Lsi-Chr8:7501757 | Lsi10g00706 | Lsi-Chr10:9874458 | 2.61E-16 | dispersed | |
Lsi08g00289 | Lsi-Chr8:7387147 | Lsi08g00290 | Lsi-Chr8:7501757 | 3.34E-13 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25717 | PF13837 | Myb_DNA-bind_4 | 1.90E-21 | CL0123 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi08g00290 | - | - | csv:101205810 | 880.552 |