Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00296 ATGTCGTTTCGTAGTATAGTTCGTGACGTTAGAGAAGGGTTTGGAAGTTTATCTCGGCGTAGTTTTGAGGTGAGACTGCCTGGTCACCAGCGGGGTAAATCTCATGGATCAGTCCATGATTTGCATGACCAACCTCTGGTAATTCAGAACAGTCGTTGGGCTAGCCTCCCGCCTGAGCTATTGCGGGATGTAGTCATGAGACTGGAGGAGAGTGAGAGCATGTGGCCTGCTAGGAAACATGTTGTTGCTTGTGCTGCTGTTTGTAGGTCGTGGAGGGAAATGTGCAAAGAGATAGTAAAAAGTCCCGAGTTCTCTGGAAAAATCACCTTCCCTGTCTCCTTAAAACAGCCAGGGACTCGTGACGGAACCATTCAGTGCTTCATTAAGAGGGACAAATCTAATTTGACTTATCACCTTTACCTTTGCCTCAGTCCCGCTTTACTTGTTGATAATGGGAAGTTTCTTCTTTCTGCCAAAAGAACAAGGAGAACGACGTGCACTGAATACGTGATCTCCATGGATGCAGATAATATATCAAGATCGAGCAACACGTACATTGGAAAACTAAGGTCAAACTTTCTTGGGACCAAGTTCATTATCTATGATACACAGCCACCATACAACAATGCCCAAATTTCCCCACCTGGCCGTAGCCGTAGATTCTACTCGAAAAAAGTTTCTCCAAAAGTCCCAACTGGTAGCTATGACATTGCTCAAGTCACTTATGAACTGAACGTTCTTGGCACAAGAGGCCCCCGAAAGATGCACTGCACAATGCATTCCATCCCTGCCTCGTCTCTTGAGGCCGGTGGTACTGTTCCAGGCCAGCCCGAGGTTGTCCCTCGACTCCTTGGGGAATCATTTCGAAGTATATCATTCTCCAAGTCTGTCTTCAATTCTACAGAGTTCAGTAGTTCCCGTTTCTCTGACATTGTTGGCTCTCGAGACGAAGATGAAATGGGGAAGGAGAGACCACTGGTTCTTAGGAACAAGCCACCGCGGTGGCATGAGCAGTTGCAGTGTTGGTGCCTTAATTTCCGGGGGCGAGTAACCGTTGCTTCTGTGAAGAACTTTCAACTGATAGCTGCTACCGAGCCTTCTTCCACAGCTACAAACCAATCACAGCCAAACCAACATGCCCAATCTTCCCAATCTGACCATGACAAGATCATTCTTCAATTTGGGAAGGTCGGGAAGGACATGTTTACGATGGATTACCGATATCCATTGTCAGCATTTCAAGCCTTTGCAATCTGTTTGAGTAGCTTTGACACCAAATTGGCTTGTGAATAA 1293 46.48 MSFRSIVRDVREGFGSLSRRSFEVRLPGHQRGKSHGSVHDLHDQPLVIQNSRWASLPPELLRDVVMRLEESESMWPARKHVVACAAVCRSWREMCKEIVKSPEFSGKITFPVSLKQPGTRDGTIQCFIKRDKSNLTYHLYLCLSPALLVDNGKFLLSAKRTRRTTCTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNAQISPPGRSRRFYSKKVSPKVPTGSYDIAQVTYELNVLGTRGPRKMHCTMHSIPASSLEAGGTVPGQPEVVPRLLGESFRSISFSKSVFNSTEFSSSRFSDIVGSRDEDEMGKERPLVLRNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATEPSSTATNQSQPNQHAQSSQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7776228 7780264 + Lsi08G002960.1 Lsi08g00296 668222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00296 430 PANTHER TUBBY-RELATED 1 430 - -
Lsi08g00296 430 PRINTS Tubby superfamily signature 408 430 IPR000007 -
Lsi08g00296 430 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Lsi08g00296 430 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Lsi08g00296 430 PRINTS Tubby superfamily signature 387 406 IPR000007 -
Lsi08g00296 430 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Lsi08g00296 430 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Lsi08g00296 430 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Lsi08g00296 430 Gene3D Tubby Protein; Chain A 112 424 IPR025659 -
Lsi08g00296 430 Pfam F-box domain 53 100 IPR001810 GO:0005515
Lsi08g00296 430 Gene3D - 48 101 - -
Lsi08g00296 430 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 430 - -
Lsi08g00296 430 SUPERFAMILY F-box domain 49 96 IPR036047 GO:0005515
Lsi08g00296 430 Pfam Tub family 114 425 IPR000007 -
Lsi08g00296 430 ProSitePatterns Tub family signature 2. 415 430 IPR018066 -
Lsi08g00296 430 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Lsi08g00296 430 SUPERFAMILY Tubby C-terminal domain-like 102 430 IPR025659 -
Lsi08g00296 430 MobiDBLite consensus disorder prediction 366 386 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00201 Lsi-Chr5:2777209 Lsi08g00296 Lsi-Chr8:7776228 0 dispersed
Lsi05g01499 Lsi-Chr5:22828303 Lsi08g00296 Lsi-Chr8:7776228 1.05E-120 dispersed
Lsi08g00296 Lsi-Chr8:7776228 Lsi08g00555 Lsi-Chr8:13741039 0 dispersed
Lsi08g00296 Lsi-Chr8:7776228 Lsi04g01686 Lsi-Chr4:24240314 1.50E-152 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25718 PF01167 Tub 9.00E-119 CL0395 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00296 K19600 - csv:101206041 856.67