Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00355 ATGGGATCATGCCTCTCTGGGGACCGGAACAAGCGCACGATTCCTTATTCTGAGCTTGCTTCCACTTCTCGTGATGATGACGTTATTACGCGAAGGAACTCCAAGAGGAAGATTACGAGAAAAGGTTCTTCTCCCTCGAATGACTCGTCAAGGGAGATGTCGCTTCATCGAGTTCCTGGCCGGATGTTTTTGAATGGAACAACTGATCATGCCTCGCTCTTTACTAGGCAAGGCAAGAAAGGCATCAATCAGGACGCTATGATTGTTTGGGAGAATTTTGGTTCAAAAGAAGATACAATATTTTGTGGAGTCTTTGATGGACACGGTCCCTTTGGCCATATGGTTGCAAAGAAAGTCAGAGATTCTCTTCCTCTAAAACTGAGTGCTCAGTTGGAGATGGATGCTACCAGAAAGGAAGCGCAAAATGATATCAGATGTCAAGTCTCTCCACCAACGCTGGTTAACAAGGACTCTGGAACCTCTCATTGTGATCCTGGTCATGAGGGCAGTTACGATGACATTTATATCATGCTGAAAGAGTCTTTTCTAAAGGCTTTTAAGGTGATGGACAAGGAACTTAAACTACATCCATATATTGATTGCTATACCAGTGGTGCAACATCGGTTGCCTTGGTCAAACAGGGTCGGGATCTTATCATTGGAAATGTTGGGGACTCGAGGGCTGTTTTAGGTACTAGAGATAAATCTAACTCTCTCGTTGCAGTTCAGTTGACCGTGGACCTCAAGCCAAATCTTCCAAGGGAAGCTGAAAGGATCAGACTTTGCAAGGGAAGAATCTTTGCTCTTCAAAATGAGCCTGAGATTTTTCGGGTTTGGCTTCCCAACAATGATTCTCCTGGGCTTGCTATGGCCAGAGCCTTCGGAGATTTCTGTTTGAAAGATTTTGGTGTGATAGCCGTTCCCGATGTTTCTTATTGTCATCTTACTGAGAAAGATGAGTTTGTGGTACTGGCTACCGATGGGGTTTGGGATGTTCTCTCAAATGAAGAGGTTGTCGCAATTGTTGCATCGTCTCCGAGATCCTCTGCAGCTCGTAGCCTTGTGGACTCAGCTACTCGAGCATGGAGATTAAAGTATCCAACGGCCAAGGTCGATGATTGTGCTGTAGTCTGCCTATACCTGGACTCTAATGAAAGTACTGCAGTGACAGCTAAAGATCAGGAATTCACCAATGACATGGAAACTTAG 1209 45.0 MGSCLSGDRNKRTIPYSELASTSRDDDVITRRNSKRKITRKGSSPSNDSSREMSLHRVPGRMFLNGTTDHASLFTRQGKKGINQDAMIVWENFGSKEDTIFCGVFDGHGPFGHMVAKKVRDSLPLKLSAQLEMDATRKEAQNDIRCQVSPPTLVNKDSGTSHCDPGHEGSYDDIYIMLKESFLKAFKVMDKELKLHPYIDCYTSGATSVALVKQGRDLIIGNVGDSRAVLGTRDKSNSLVAVQLTVDLKPNLPREAERIRLCKGRIFALQNEPEIFRVWLPNNDSPGLAMARAFGDFCLKDFGVIAVPDVSYCHLTEKDEFVVLATDGVWDVLSNEEVVAIVASSPRSSAARSLVDSATRAWRLKYPTAKVDDCAVVCLYLDSNESTAVTAKDQEFTNDMET 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9742854 9748859 - Lsi08G003550.1 Lsi08g00355 668281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00355 402 MobiDBLite consensus disorder prediction 15 54 - -
Lsi08g00355 402 Pfam Protein phosphatase 2C 84 365 IPR001932 -
Lsi08g00355 402 PANTHER ALPHABET, ISOFORM E-RELATED 1 390 - -
Lsi08g00355 402 SMART PP2C_4 59 379 IPR001932 -
Lsi08g00355 402 Gene3D - 65 383 IPR036457 -
Lsi08g00355 402 ProSiteProfiles PPM-type phosphatase domain profile. 70 381 IPR001932 -
Lsi08g00355 402 PANTHER PROTEIN PHOSPHATASE 2C 33-RELATED 1 390 - -
Lsi08g00355 402 SUPERFAMILY PP2C-like 69 382 IPR036457 -
Lsi08g00355 402 CDD PP2Cc 70 381 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00355 Lsi-Chr8:9742854 Lsi11g00963 Lsi-Chr11:15029915 1.18E-170 dispersed
Lsi08g00355 Lsi-Chr8:9742854 Lsi11g01535 Lsi-Chr11:23687834 1.21E-139 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00355 - - csv:101222320 741.11