Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00357 ATGGCCACCGCCGGCATCGGTACTTCACGCCCTTTGACTCTGTTGCTTTTTGTCATCATCAACTTACTTTCCAACACCATCACCGGCGGCGGAGGAGGAGTTTATGCTGATAACGGTGTGTTCAGTGTCAAATACAAGTATGCCGGACGGGAACGTTCTCTTAGTACCCTTAAGGCGCACGACATCAGCCGTCAGCTTCGATTTCTTGCTGGCGTCGATATCCCTCTCGGTGGCTCTGGCCGGCCTGATGCGGTCGGGCTTTACTATGCCAAAATTGGAATTGGAACTCCTCCGAAGGATTATTATGTTCAAGTTGATACAGGGAGCGATATCGTATGGGTGAATTGTATTCAGTGTAGGGAGTGTCCGAGGAAAAGCTCTCTTGGGATGGAACTCACTCCTTATGATTTAGGGGAGTCCACGACTGGGAAATTGGTTTCTTGTGATGAACAATTTTGCTTGGAGGTGAATGGGGGTCCACTTTCAGGCTGCACGACTAATATGTCCTGCCCATATCTTCAGATATATGGTGACGGGAGCTCGACTGCAGGGTATTTTGTCAAGGACTACGTACAATATGATCGAGTTTCTGGAGACCTTGAAACTACAGCTGCCAATGGAAGTATCAAGTTTGGATGTGGTGCCAGACAATCTGGGGATCTTGGCTCTTCTGGTGAAGAAGCACTTGATGGCATACTTGGTTTTGGAAAATCAAATTCATCTATTATTTCACAACTAGCCTCCTCAAGAAAAGTGAAGAAGATGTTTGCTCATTGCCTAGATGGAATAAATGGGGGTGGTATCTTTGCGATGGGACATGTTGTGCAGCCAAAAGTTAATATGACTCCTTTGGTACCAAATCAGCCACATTACAATGTCAATATGACGGGAGTACAAGTTGGTCGTGTCATGTTAAATATTTCTGCCGATGTATTCGAGGCAGGAGACAGAAAAGGGACAATCATTGATAGTGGTACAACCTTGGCATATCTTCCTGAACTGATATACGAGCCTTTAGTGACCATGATACTCTCTCAGCAACACAATTTGGAAGTTCAAACCATTCATGGAGAATATAAATGTTTTCAGTACTCAGAGAGGGTCGATGATGGATTTCCTCCAGTTATTTTCCATTTTGAGAACTCACTCTTGTTGAGGGTTTATCCTCATGAGTATCTATTCCAATATGAGGGCTTGTGGTGTATTGGTTGGCAAAACAGTGGGATGCAATCTAGAGATAGGAAGAACGTTACACTCTTTGGAGGTAAACTCCAAAATTTGTCCACGTGGATATTAATTCGTCTTAAAATTCTAGCTTGCCTTCTGGCAGGAAGGTTGCTAACTTTTAGAGTATCCATAATCCCTTATCTTCCCGTCGATTGTATGAGCTGTATATTCAGGCAGTGTGCTATGTAG 1416 44.14 MATAGIGTSRPLTLLLFVIINLLSNTITGGGGGVYADNGVFSVKYKYAGRERSLSTLKAHDISRQLRFLAGVDIPLGGSGRPDAVGLYYAKIGIGTPPKDYYVQVDTGSDIVWVNCIQCRECPRKSSLGMELTPYDLGESTTGKLVSCDEQFCLEVNGGPLSGCTTNMSCPYLQIYGDGSSTAGYFVKDYVQYDRVSGDLETTAANGSIKFGCGARQSGDLGSSGEEALDGILGFGKSNSSIISQLASSRKVKKMFAHCLDGINGGGIFAMGHVVQPKVNMTPLVPNQPHYNVNMTGVQVGRVMLNISADVFEAGDRKGTIIDSGTTLAYLPELIYEPLVTMILSQQHNLEVQTIHGEYKCFQYSERVDDGFPPVIFHFENSLLLRVYPHEYLFQYEGLWCIGWQNSGMQSRDRKNVTLFGGKLQNLSTWILIRLKILACLLAGRLLTFRVSIIPYLPVDCMSCIFRQCAM 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9774356 9781723 - Lsi08G003570.1 Lsi08g00357 668283

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00357 471 CDD pepsin_A_like_plant 88 421 IPR034161 -
Lsi08g00357 471 Gene3D Acid Proteases 79 272 IPR021109 -
Lsi08g00357 471 PRINTS Pepsin (A1) aspartic protease family signature 320 331 IPR001461 GO:0004190|GO:0006508
Lsi08g00357 471 PRINTS Pepsin (A1) aspartic protease family signature 94 114 IPR001461 GO:0004190|GO:0006508
Lsi08g00357 471 ProSiteProfiles Peptidase family A1 domain profile. 88 443 IPR033121 -
Lsi08g00357 471 Gene3D Acid Proteases 273 428 IPR021109 -
Lsi08g00357 471 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 12 424 - -
Lsi08g00357 471 SUPERFAMILY Acid proteases 83 425 IPR021109 -
Lsi08g00357 471 Pfam Xylanase inhibitor N-terminal 88 272 IPR032861 -
Lsi08g00357 471 PANTHER ASPARTYL PROTEASES 12 424 IPR001461 GO:0004190|GO:0006508
Lsi08g00357 471 Pfam Xylanase inhibitor C-terminal 290 423 IPR032799 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00357 - - - csv:101222560 813.142
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00357 Lsi-Chr8:9774356 Lsi11g00964 Lsi-Chr11:15057562 2.10E-169 dispersed
Lsi08g00357 Lsi-Chr8:9774356 Lsi10g01210 Lsi-Chr10:16379342 8.91E-87 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g362 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00282 . . . . . . . . . . . . . . . . . Cpe02g00391 . . . . . . . . . . . . . . Lsi08g00357 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008412 1 2 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 0 1 1 1 2 4 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00357 Lsi_Chr08 FPKM 33.14225 38.216492 46.138802 44.587017 27.938328 27.941093 27.783804 34.04982 33.054375 33.380558