Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00359 ATGAATTGCGTTTCTGATTTCGTAAACTTTAGGGCAGCGAGTGGAACATTTCACGATGGCAATCTACTATTGAATCAGAAAGGATTGTGGCTTATATCTGAAGAGAAAGAAGCGCAGATTCCACTGTCGTTCCAACCTAGGCTCCTTGATGCATATGCAACAAAATCATTTTTTCCTTTTTCAATTTTGTTTGAACAGACTACAGATTGTAAGGAGCTTGATGTTGATTTCTCATTGGAAGATCTAGAGACACTGAAAGTTATTGGGAAAGGAAGTCGAGGTGTAGTACAACTTGTTCGACACAAATGGGTAATCCAGATGAACATACACGAGGATAGTCGTGAACAGATAGTACAAGAACTGAAAATAAATCAAGAAACACAATGTCCACAAATTGTGGTCTGCCATCATTCTTTCTACCACAATGGTGCCATTTCTCTTGTGCTAGAATATATGGATCGTGGTTCTTTAGCCGATGTAGTCAGACAAGTCAAAACAATTCTTGAACCATATCTTGCAGTTGTTTGTAAACAGAGACATCAAGCCATCGAGGCATCGAATCTACTTGTGAACCATAAAGGTGAGGTCAAAATCACTGATTTTGGAGTTAGTGCAATGCTAGCAAGTTCTATGGGTCAGACATTTGTAGGGACTTACAACTACACGTCGCCTGAACGAATTAGCGGGGGAACATATGATTACAGCAGTGATATATGGAGTTTGGGCTTGGTTGTACTTGAATGTGCCATTGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTTCTAGAGGCAATTGTAGCAAAGCCACCGCCTTCTGCGCCACCTGATCAATTTTCCCCCGACATTAAGAAGGACCCGAAAGAAAGATCATCATCATTAGATCTTCTGAATCATCCTTTCATCAAGAAATTCGAAGATAAAGACATTGATGTCGGGATTCTCATCGGCAGCTTGGATCCTCTGCCGCCATTATTGCGTGTCCGAGACGGTTTCCGAGTAAATGACAGCCAATTCCCAGCCTAA 1050 41.33 MNCVSDFVNFRAASGTFHDGNLLLNQKGLWLISEEKEAQIPLSFQPRLLDAYATKSFFPFSILFEQTTDCKELDVDFSLEDLETLKVIGKGSRGVVQLVRHKWVIQMNIHEDSREQIVQELKINQETQCPQIVVCHHSFYHNGAISLVLEYMDRGSLADVVRQVKTILEPYLAVVCKQRHQAIEASNLLVNHKGEVKITDFGVSAMLASSMGQTFVGTYNYTSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPDIKKDPKERSSSLDLLNHPFIKKFEDKDIDVGILIGSLDPLPPLLRVRDGFRVNDSQFPA 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9808183 9817576 - Lsi08G003590.1 Lsi08g00359 668285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00359 349 SUPERFAMILY Protein kinase-like (PK-like) 71 318 IPR011009 -
Lsi08g00359 349 Pfam Protein kinase domain 83 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00359 349 Gene3D Phosphorylase Kinase; domain 1 62 153 - -
Lsi08g00359 349 ProSiteProfiles Protein kinase domain profile. 82 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00359 349 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 8 39 - -
Lsi08g00359 349 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 66 329 - -
Lsi08g00359 349 Gene3D Transferase(Phosphotransferase) domain 1 154 324 - -
Lsi08g00359 349 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 8 39 - -
Lsi08g00359 349 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 66 329 - -
Lsi08g00359 349 MobiDBLite consensus disorder prediction 279 299 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00359 K04368 MAP2K1, MEK1; mitogen-activated protein kinase kinase 1 [EC:2.7.12.2] - csv:101218848 481.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00359 Lsi-Chr8:9808183 Lsi11g00218 Lsi-Chr11:2223292 1.75E-174 dispersed
Lsi08g00359 Lsi-Chr8:9808183 Lsi06g00302 Lsi-Chr6:3461235 1.16E-111 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi06g00302 CCT 28 353 MAP Kinase Kinase Gene Family AT4G26070 70.8 1.6e-136 482.6
Lsi11g00177 CCT 27 410 MAP Kinase Kinase Gene Family AT4G26070 56.2 1.6e-115 412.9
Lsi11g00218 . 26 332 MAP Kinase Kinase Gene Family AT4G26070 52.9 3.9e-98 355.1
Lsi06g00302 CCT 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.3 2.2e-133 472.2
Lsi11g00177 CCT 1 308 MAP Kinase Kinase Gene Family AT4G29810 63.3 3.4e-110 395.2
Lsi11g00218 . 10 312 MAP Kinase Kinase Gene Family AT4G29810 59.4 6.2e-104 374.4
Lsi03g01358 . 36 486 MAP Kinase Kinase Gene Family AT5G40440 73.9 5.8e-207 717.2
Lsi07g00631 . 1 368 MAP Kinase Kinase Gene Family AT1G51660 70.8 8.7e-128 453.8
Lsi07g00631 . 1 368 MAP Kinase Kinase Gene Family AT3G21220 69.6 4.0e-130 461.5
Lsi02g00252 . 41 311 MAP Kinase Kinase Gene Family AT3G21220 54.6 2.5e-84 309.3
Lsi11g00218 . 1 335 MAP Kinase Kinase Gene Family AT5G56580 79.7 2.4e-159 558.5
Lsi08g00359 . 5 335 MAP Kinase Kinase Gene Family AT5G56580 64.6 1.9e-119 426.0
Lsi06g00302 CCT 7 352 MAP Kinase Kinase Gene Family AT5G56580 59.4 2.5e-119 425.6
Lsi02g00252 . 1 313 MAP Kinase Kinase Gene Family AT1G18350 63.3 9.9e-109 390.2
Lsi07g00631 . 77 336 MAP Kinase Kinase Gene Family AT1G18350 52.8 2.9e-76 282.3
Lsi02g00252 . 1 297 MAP Kinase Kinase Gene Family AT3G06230 52.6 9.8e-82 300.4
Lsi02g00252 . 1 309 MAP Kinase Kinase Gene Family AT1G73500 67.1 1.2e-114 409.8
Lsi07g00631 . 77 336 MAP Kinase Kinase Gene Family AT1G73500 52.5 4.5e-77 285.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007196 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 2 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83813 PF00069 Pkinase 6.60E-34 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00359 Lsi_Chr08 FPKM 9.058637 8.599721 11.609007 12.790964 11.36978 11.315076 11.453979 13.81451 11.668655 13.112817