Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi08g00359 | ATGAATTGCGTTTCTGATTTCGTAAACTTTAGGGCAGCGAGTGGAACATTTCACGATGGCAATCTACTATTGAATCAGAAAGGATTGTGGCTTATATCTGAAGAGAAAGAAGCGCAGATTCCACTGTCGTTCCAACCTAGGCTCCTTGATGCATATGCAACAAAATCATTTTTTCCTTTTTCAATTTTGTTTGAACAGACTACAGATTGTAAGGAGCTTGATGTTGATTTCTCATTGGAAGATCTAGAGACACTGAAAGTTATTGGGAAAGGAAGTCGAGGTGTAGTACAACTTGTTCGACACAAATGGGTAATCCAGATGAACATACACGAGGATAGTCGTGAACAGATAGTACAAGAACTGAAAATAAATCAAGAAACACAATGTCCACAAATTGTGGTCTGCCATCATTCTTTCTACCACAATGGTGCCATTTCTCTTGTGCTAGAATATATGGATCGTGGTTCTTTAGCCGATGTAGTCAGACAAGTCAAAACAATTCTTGAACCATATCTTGCAGTTGTTTGTAAACAGAGACATCAAGCCATCGAGGCATCGAATCTACTTGTGAACCATAAAGGTGAGGTCAAAATCACTGATTTTGGAGTTAGTGCAATGCTAGCAAGTTCTATGGGTCAGACATTTGTAGGGACTTACAACTACACGTCGCCTGAACGAATTAGCGGGGGAACATATGATTACAGCAGTGATATATGGAGTTTGGGCTTGGTTGTACTTGAATGTGCCATTGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTTCTAGAGGCAATTGTAGCAAAGCCACCGCCTTCTGCGCCACCTGATCAATTTTCCCCCGACATTAAGAAGGACCCGAAAGAAAGATCATCATCATTAGATCTTCTGAATCATCCTTTCATCAAGAAATTCGAAGATAAAGACATTGATGTCGGGATTCTCATCGGCAGCTTGGATCCTCTGCCGCCATTATTGCGTGTCCGAGACGGTTTCCGAGTAAATGACAGCCAATTCCCAGCCTAA | 1050 | 41.33 | MNCVSDFVNFRAASGTFHDGNLLLNQKGLWLISEEKEAQIPLSFQPRLLDAYATKSFFPFSILFEQTTDCKELDVDFSLEDLETLKVIGKGSRGVVQLVRHKWVIQMNIHEDSREQIVQELKINQETQCPQIVVCHHSFYHNGAISLVLEYMDRGSLADVVRQVKTILEPYLAVVCKQRHQAIEASNLLVNHKGEVKITDFGVSAMLASSMGQTFVGTYNYTSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPDIKKDPKERSSSLDLLNHPFIKKFEDKDIDVGILIGSLDPLPPLLRVRDGFRVNDSQFPA | 349 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 9808183 | 9817576 | - | Lsi08G003590.1 | Lsi08g00359 | 668285 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi08g00359 | 349 | SUPERFAMILY | Protein kinase-like (PK-like) | 71 | 318 | IPR011009 | - | |
Lsi08g00359 | 349 | Pfam | Protein kinase domain | 83 | 310 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi08g00359 | 349 | Gene3D | Phosphorylase Kinase; domain 1 | 62 | 153 | - | - | |
Lsi08g00359 | 349 | ProSiteProfiles | Protein kinase domain profile. | 82 | 310 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi08g00359 | 349 | PANTHER | MITOGEN-ACTIVATED KINASE KINASE KINASE | 8 | 39 | - | - | |
Lsi08g00359 | 349 | PANTHER | MITOGEN-ACTIVATED KINASE KINASE KINASE | 66 | 329 | - | - | |
Lsi08g00359 | 349 | Gene3D | Transferase(Phosphotransferase) domain 1 | 154 | 324 | - | - | |
Lsi08g00359 | 349 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 | 8 | 39 | - | - | |
Lsi08g00359 | 349 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 | 66 | 329 | - | - | |
Lsi08g00359 | 349 | MobiDBLite | consensus disorder prediction | 279 | 299 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi08g00359 | Lsi-Chr8:9808183 | Lsi11g00218 | Lsi-Chr11:2223292 | 1.75E-174 | dispersed | |
Lsi08g00359 | Lsi-Chr8:9808183 | Lsi06g00302 | Lsi-Chr6:3461235 | 1.16E-111 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83813 | PF00069 | Pkinase | 6.60E-34 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi08g00359 | K04368 | - | csv:101218848 | 481.1 |