Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00359 ATGAATTGCGTTTCTGATTTCGTAAACTTTAGGGCAGCGAGTGGAACATTTCACGATGGCAATCTACTATTGAATCAGAAAGGATTGTGGCTTATATCTGAAGAGAAAGAAGCGCAGATTCCACTGTCGTTCCAACCTAGGCTCCTTGATGCATATGCAACAAAATCATTTTTTCCTTTTTCAATTTTGTTTGAACAGACTACAGATTGTAAGGAGCTTGATGTTGATTTCTCATTGGAAGATCTAGAGACACTGAAAGTTATTGGGAAAGGAAGTCGAGGTGTAGTACAACTTGTTCGACACAAATGGGTAATCCAGATGAACATACACGAGGATAGTCGTGAACAGATAGTACAAGAACTGAAAATAAATCAAGAAACACAATGTCCACAAATTGTGGTCTGCCATCATTCTTTCTACCACAATGGTGCCATTTCTCTTGTGCTAGAATATATGGATCGTGGTTCTTTAGCCGATGTAGTCAGACAAGTCAAAACAATTCTTGAACCATATCTTGCAGTTGTTTGTAAACAGAGACATCAAGCCATCGAGGCATCGAATCTACTTGTGAACCATAAAGGTGAGGTCAAAATCACTGATTTTGGAGTTAGTGCAATGCTAGCAAGTTCTATGGGTCAGACATTTGTAGGGACTTACAACTACACGTCGCCTGAACGAATTAGCGGGGGAACATATGATTACAGCAGTGATATATGGAGTTTGGGCTTGGTTGTACTTGAATGTGCCATTGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTTCTAGAGGCAATTGTAGCAAAGCCACCGCCTTCTGCGCCACCTGATCAATTTTCCCCCGACATTAAGAAGGACCCGAAAGAAAGATCATCATCATTAGATCTTCTGAATCATCCTTTCATCAAGAAATTCGAAGATAAAGACATTGATGTCGGGATTCTCATCGGCAGCTTGGATCCTCTGCCGCCATTATTGCGTGTCCGAGACGGTTTCCGAGTAAATGACAGCCAATTCCCAGCCTAA 1050 41.33 MNCVSDFVNFRAASGTFHDGNLLLNQKGLWLISEEKEAQIPLSFQPRLLDAYATKSFFPFSILFEQTTDCKELDVDFSLEDLETLKVIGKGSRGVVQLVRHKWVIQMNIHEDSREQIVQELKINQETQCPQIVVCHHSFYHNGAISLVLEYMDRGSLADVVRQVKTILEPYLAVVCKQRHQAIEASNLLVNHKGEVKITDFGVSAMLASSMGQTFVGTYNYTSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPDIKKDPKERSSSLDLLNHPFIKKFEDKDIDVGILIGSLDPLPPLLRVRDGFRVNDSQFPA 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9808183 9817576 - Lsi08G003590.1 Lsi08g00359 668285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00359 349 SUPERFAMILY Protein kinase-like (PK-like) 71 318 IPR011009 -
Lsi08g00359 349 Pfam Protein kinase domain 83 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00359 349 Gene3D Phosphorylase Kinase; domain 1 62 153 - -
Lsi08g00359 349 ProSiteProfiles Protein kinase domain profile. 82 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00359 349 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 8 39 - -
Lsi08g00359 349 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 66 329 - -
Lsi08g00359 349 Gene3D Transferase(Phosphotransferase) domain 1 154 324 - -
Lsi08g00359 349 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 8 39 - -
Lsi08g00359 349 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 66 329 - -
Lsi08g00359 349 MobiDBLite consensus disorder prediction 279 299 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00359 Lsi-Chr8:9808183 Lsi11g00218 Lsi-Chr11:2223292 1.75E-174 dispersed
Lsi08g00359 Lsi-Chr8:9808183 Lsi06g00302 Lsi-Chr6:3461235 1.16E-111 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83813 PF00069 Pkinase 6.60E-34 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00359 K04368 - csv:101218848 481.1