Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00360 ATGGATTCTGAGGACGATCTTCATTACTCCACCGACGTTGAATCCGTCGACGATGATTGCGATTTTTACAGCGGTGAGATGGACATGGGTATGGGTTATTACAGCGATGACGACGACCCTGATGCTGAGGATTTGGTCGATGACGATACCGACGATTACTTCGAGTCCCGCCGCCGCGAGTTTTCGAGGTTCTGCTCCCTGCTGCCCTTCAAGTTGATTTTAAGTGGTATCGTTTTCTTTTGTCGAGCGGCTAAGAGTGTTACTAAAGTCCACGATGAATGGTTTGCTGATGAAACTCAAGTAAGGAAGCAAGTTGGCTTGTTAGAAGCACCTGTTGTACATGTCCTAAATGCTAGAGAAAGAACCTGTGGAATCTGTTTTGAGTCCTATCCAAATAGTAGGATCAAGTCAGCTGCCTGTGGTCATCCTTTCTGTGCCTTCTGCTGGGAAGGCTACATTAGCACATCAATTAATGATGGTCCTGGATGCCTGACATTGAGATGTCCTGATCCTTCTTGCGGTGCTGTGGTTGATCAAGACATGATTAATTCATTGGCCTCCAATGAAGACAGGAATAAATATGCTCGTTACCTTCTTAGGTCTTATGTTGAAGACAACAAAAAGACTAAATGGTGCCCAGCACCTGGTTGTGAGCATGCTGTTCTCTTTGATGCTGGCAATGGAAATTATGATGTTTCTTGCTTCTGCACTTATGGCTTTTGCTGGAAATGCACAGAAGAAGCTCACCGTCCTGTAGATTGTGCTACTGTGGAAAAATGGATTTTAAAGAACAGTGCTGAGTCTGAAAATATGAACTGGATATTAGCTAATTCCAAGCCTTGTCCAAAGTGCAAGCGGCCAATTGAGAAAAATCAAGGGTGCATGCACATGACTTGCACACCTCCTTGTAAATTTGAATTTTGCTGGCTATGTCTTGGTGCGTGGTCTGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGCAACCGATATGAGGTTGCTAAGCAAGATGGTGTGTATGATGAGGCTGAGAAAAGAAGAGAAATGGCGAAGAATTCTCTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCAATAGCAGATTTGCATCAAATGCAGACTGTGCATATTGAGAAGCTCAGTGATATACACTGCACTCCTGAGTCTCAGCTAAAGTTCATAACAGAGGCTTGGTTACAGATAATTGAATGTAGACGGGTTTTGAAATGGACTTATGCATATGGTTATTACCTGCCGGAACAGGAGCATGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCCGAGTCTGGATTAGAAAGGCTCCATCAATGCGCCGAAAAGGAACTACTCCAGTTCCTCAATGCCGAAGGTCCATCAAAAGAATTTAACGACTTCCGCACTAAGCTTGCTGGTCTGACCAGTGTTACTCGAAATTACTTTGAGAACCTGGTTAGAGCATTAGAGAATGGGCTTTCAGATGTGAACTCTCACGGAGCAAGCAGCGGCACAACGAGCTCAAAAAGCACAGCAGGAAGTAGTAAAGGAGGGAGAAGCGGACGTGGTAAGGGAGTCAGTCGAACCACTAGTTCAACCACCAGAAGTGGCGACAATGCCACTCATTGGTCATGTGAACACTGTACCTTTGTGAACACGAGATCTGCTACTACGTGCGAGATGTGCCATCAACGCCATTGA 1728 44.79 MDSEDDLHYSTDVESVDDDCDFYSGEMDMGMGYYSDDDDPDAEDLVDDDTDDYFESRRREFSRFCSLLPFKLILSGIVFFCRAAKSVTKVHDEWFADETQVRKQVGLLEAPVVHVLNARERTCGICFESYPNSRIKSAACGHPFCAFCWEGYISTSINDGPGCLTLRCPDPSCGAVVDQDMINSLASNEDRNKYARYLLRSYVEDNKKTKWCPAPGCEHAVLFDAGNGNYDVSCFCTYGFCWKCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKAIADLHQMQTVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGASSGTTSSKSTAGSSKGGRSGRGKGVSRTTSSTTRSGDNATHWSCEHCTFVNTRSATTCEMCHQRH 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9845857 9854133 + Lsi08G003600.1 Lsi08g00360 668286

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00360 575 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 81 522 - -
Lsi08g00360 575 ProSiteProfiles Zinc finger RanBP2 type profile. 544 575 IPR001876 -
Lsi08g00360 575 Pfam IBR domain, a half RING-finger domain 192 254 IPR002867 -
Lsi08g00360 575 Pfam IBR domain, a half RING-finger domain 271 319 IPR002867 -
Lsi08g00360 575 Gene3D - 545 575 - -
Lsi08g00360 575 ProSiteProfiles TRIAD supradomain profile. 119 332 IPR044066 -
Lsi08g00360 575 ProSiteProfiles Zinc finger RING-type profile. 123 169 IPR001841 -
Lsi08g00360 575 SUPERFAMILY Ran binding protein zinc finger-like 548 573 IPR036443 -
Lsi08g00360 575 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 205 IPR013083 -
Lsi08g00360 575 SUPERFAMILY RING/U-box 193 261 - -
Lsi08g00360 575 ProSitePatterns Zinc finger RanBP2-type signature. 552 571 IPR001876 -
Lsi08g00360 575 CDD RING-HC_RBR_TRIAD1_like 123 173 - -
Lsi08g00360 575 Gene3D - 250 505 - -
Lsi08g00360 575 SUPERFAMILY RING/U-box 120 201 - -
Lsi08g00360 575 Pfam Ariadne domain 341 502 IPR045840 -
Lsi08g00360 575 MobiDBLite consensus disorder prediction 506 548 - -
Lsi08g00360 575 SUPERFAMILY RING/U-box 273 321 - -
Lsi08g00360 575 SMART zf_4 550 574 IPR001876 -
Lsi08g00360 575 MobiDBLite consensus disorder prediction 506 526 - -
Lsi08g00360 575 Coils Coil 340 360 - -
Lsi08g00360 575 SMART ibrneu5 192 254 IPR002867 -
Lsi08g00360 575 SMART ibrneu5 258 328 IPR002867 -
Lsi08g00360 575 MobiDBLite consensus disorder prediction 533 548 - -
Lsi08g00360 575 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 81 522 IPR031127 GO:0004842|GO:0016567
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00360 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - csv:101223037 1004.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00360 Lsi-Chr8:9845857 Lsi11g00931 Lsi-Chr11:13382397 0 dispersed
Lsi08g00360 Lsi-Chr8:9845857 Lsi02g01443 Lsi-Chr2:20110933 4.57E-07 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi10g00340 . 294 719 ARIADNE family AT4G34370 72.0 3.8e-183 637.9
Lsi10g00340 . 188 672 ARIADNE family AT2G16090 77.0 1.0e-224 776.2
Lsi10g00340 . 168 673 ARIADNE family AT3G27710 61.4 1.8e-182 636.0
Lsi10g00340 . 174 652 ARIADNE family AT3G27720 53.8 2.9e-142 502.3
Lsi11g00931 . 1 570 ARIADNE family AT1G05890 60.8 5.8e-214 740.7
Lsi08g00360 . 86 512 ARIADNE family AT1G05890 76.1 1.3e-202 703.0
Lsi11g00931 . 19 625 ARIADNE family AT1G65430 69.7 7.1e-254 873.2
Lsi08g00360 . 16 572 ARIADNE family AT1G65430 65.1 3.0e-220 761.5
Lsi11g00931 . 13 488 ARIADNE family AT2G31780 52.0 1.0e-143 506.9
Lsi08g00360 . 51 437 ARIADNE family AT2G31780 55.0 2.5e-129 459.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00360 Lsi_Chr08 FPKM 0.110572 0.0 0.589493 0.488832 0.489126 0.369028 0.380532 0.982312 0.661885 0.55583