Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00360 ATGGATTCTGAGGACGATCTTCATTACTCCACCGACGTTGAATCCGTCGACGATGATTGCGATTTTTACAGCGGTGAGATGGACATGGGTATGGGTTATTACAGCGATGACGACGACCCTGATGCTGAGGATTTGGTCGATGACGATACCGACGATTACTTCGAGTCCCGCCGCCGCGAGTTTTCGAGGTTCTGCTCCCTGCTGCCCTTCAAGTTGATTTTAAGTGGTATCGTTTTCTTTTGTCGAGCGGCTAAGAGTGTTACTAAAGTCCACGATGAATGGTTTGCTGATGAAACTCAAGTAAGGAAGCAAGTTGGCTTGTTAGAAGCACCTGTTGTACATGTCCTAAATGCTAGAGAAAGAACCTGTGGAATCTGTTTTGAGTCCTATCCAAATAGTAGGATCAAGTCAGCTGCCTGTGGTCATCCTTTCTGTGCCTTCTGCTGGGAAGGCTACATTAGCACATCAATTAATGATGGTCCTGGATGCCTGACATTGAGATGTCCTGATCCTTCTTGCGGTGCTGTGGTTGATCAAGACATGATTAATTCATTGGCCTCCAATGAAGACAGGAATAAATATGCTCGTTACCTTCTTAGGTCTTATGTTGAAGACAACAAAAAGACTAAATGGTGCCCAGCACCTGGTTGTGAGCATGCTGTTCTCTTTGATGCTGGCAATGGAAATTATGATGTTTCTTGCTTCTGCACTTATGGCTTTTGCTGGAAATGCACAGAAGAAGCTCACCGTCCTGTAGATTGTGCTACTGTGGAAAAATGGATTTTAAAGAACAGTGCTGAGTCTGAAAATATGAACTGGATATTAGCTAATTCCAAGCCTTGTCCAAAGTGCAAGCGGCCAATTGAGAAAAATCAAGGGTGCATGCACATGACTTGCACACCTCCTTGTAAATTTGAATTTTGCTGGCTATGTCTTGGTGCGTGGTCTGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGCAACCGATATGAGGTTGCTAAGCAAGATGGTGTGTATGATGAGGCTGAGAAAAGAAGAGAAATGGCGAAGAATTCTCTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCAATAGCAGATTTGCATCAAATGCAGACTGTGCATATTGAGAAGCTCAGTGATATACACTGCACTCCTGAGTCTCAGCTAAAGTTCATAACAGAGGCTTGGTTACAGATAATTGAATGTAGACGGGTTTTGAAATGGACTTATGCATATGGTTATTACCTGCCGGAACAGGAGCATGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCCGAGTCTGGATTAGAAAGGCTCCATCAATGCGCCGAAAAGGAACTACTCCAGTTCCTCAATGCCGAAGGTCCATCAAAAGAATTTAACGACTTCCGCACTAAGCTTGCTGGTCTGACCAGTGTTACTCGAAATTACTTTGAGAACCTGGTTAGAGCATTAGAGAATGGGCTTTCAGATGTGAACTCTCACGGAGCAAGCAGCGGCACAACGAGCTCAAAAAGCACAGCAGGAAGTAGTAAAGGAGGGAGAAGCGGACGTGGTAAGGGAGTCAGTCGAACCACTAGTTCAACCACCAGAAGTGGCGACAATGCCACTCATTGGTCATGTGAACACTGTACCTTTGTGAACACGAGATCTGCTACTACGTGCGAGATGTGCCATCAACGCCATTGA 1728 44.79 MDSEDDLHYSTDVESVDDDCDFYSGEMDMGMGYYSDDDDPDAEDLVDDDTDDYFESRRREFSRFCSLLPFKLILSGIVFFCRAAKSVTKVHDEWFADETQVRKQVGLLEAPVVHVLNARERTCGICFESYPNSRIKSAACGHPFCAFCWEGYISTSINDGPGCLTLRCPDPSCGAVVDQDMINSLASNEDRNKYARYLLRSYVEDNKKTKWCPAPGCEHAVLFDAGNGNYDVSCFCTYGFCWKCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKAIADLHQMQTVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGASSGTTSSKSTAGSSKGGRSGRGKGVSRTTSSTTRSGDNATHWSCEHCTFVNTRSATTCEMCHQRH 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9845857 9854133 + Lsi08G003600.1 Lsi08g00360 668286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00360 575 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 81 522 - -
Lsi08g00360 575 ProSiteProfiles Zinc finger RanBP2 type profile. 544 575 IPR001876 -
Lsi08g00360 575 Pfam IBR domain, a half RING-finger domain 192 254 IPR002867 -
Lsi08g00360 575 Pfam IBR domain, a half RING-finger domain 271 319 IPR002867 -
Lsi08g00360 575 Gene3D - 545 575 - -
Lsi08g00360 575 ProSiteProfiles TRIAD supradomain profile. 119 332 IPR044066 -
Lsi08g00360 575 ProSiteProfiles Zinc finger RING-type profile. 123 169 IPR001841 -
Lsi08g00360 575 SUPERFAMILY Ran binding protein zinc finger-like 548 573 IPR036443 -
Lsi08g00360 575 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 205 IPR013083 -
Lsi08g00360 575 SUPERFAMILY RING/U-box 193 261 - -
Lsi08g00360 575 ProSitePatterns Zinc finger RanBP2-type signature. 552 571 IPR001876 -
Lsi08g00360 575 CDD RING-HC_RBR_TRIAD1_like 123 173 - -
Lsi08g00360 575 Gene3D - 250 505 - -
Lsi08g00360 575 SUPERFAMILY RING/U-box 120 201 - -
Lsi08g00360 575 Pfam Ariadne domain 341 502 IPR045840 -
Lsi08g00360 575 MobiDBLite consensus disorder prediction 506 548 - -
Lsi08g00360 575 SUPERFAMILY RING/U-box 273 321 - -
Lsi08g00360 575 SMART zf_4 550 574 IPR001876 -
Lsi08g00360 575 MobiDBLite consensus disorder prediction 506 526 - -
Lsi08g00360 575 Coils Coil 340 360 - -
Lsi08g00360 575 SMART ibrneu5 192 254 IPR002867 -
Lsi08g00360 575 SMART ibrneu5 258 328 IPR002867 -
Lsi08g00360 575 MobiDBLite consensus disorder prediction 533 548 - -
Lsi08g00360 575 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 81 522 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00360 Lsi-Chr8:9845857 Lsi11g00931 Lsi-Chr11:13382397 0 dispersed
Lsi08g00360 Lsi-Chr8:9845857 Lsi02g01443 Lsi-Chr2:20110933 4.57E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00360 K11968 - csv:101223037 1004.59