Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00385 ATGAAGGTCAGCGACTCCCCTTTTCTCTTTACTTACTATCTCCACGCCGACACGACGAAACAGATCCCGGCGGCGAACTCTGACTCGCGACAGACACCCGGCAAACAAGTAGATCCGGCGGCGGCGTTGATAGATCCTCGAACGACCAGCAGCGAACGGGAAGACCCACAGCGGCGCGGCCTCTTGATCTGCCATCTATTAATCGAGCTGGTCTTACTCTCGTATACAATGACAGATACAGGTGAAAATCAGCCGCCTGAACAAGTCTGTAGCTTCTTCAGAAAACCCACAAAGAACAAAAACATCAGAAAGCGGACGGTTGATGAAGACGAAGAGGATGACTCTAAAACTGAGACTTTGTTGCTGCAAAATCAGAAGAAAGCCCCCAAGACTGAAAGCAAGCTTTATTTTTCTTCTGGACCATCTAAAAGTTCCTTGTCTAATGAGTCGAATGTGGAACCTAATAAACCAATTTTCCAATTTGAGTCTTCAAAGGAAATTCAAGTTCACCATGATAGCAGAGCAACTGCAACTCTAGAAACAGAGACTGATTTCTCAAGAGATGCACGAGCCATCCGTGAGAGAGTTTTGAAGCAAGCTGAGGAGGCTTTGAAGGGTAAAGGCAAGAGTTCTGGTGGTGAGAAGTTGTATAAAGGTGTCAATGCGTATGTTGATTACAAGGCTGGCTTCAGACGGGAACATACAATTTCAAGTGAAAAAGCTGGTGGAGCACATGGGCCACTTAGAGCTTCTGCTCATATAAGAGCTTCAGCCAGATTTGATTATCAGCCTGATATTTGCAAGGATTACAAGGAGACTGGTTACTGTGGTTATGGAGATGCATGCAAGTTCATGCATGACCGAGGGGATTACAAGTCTGGGTGGCAGTTGGAAAAGGAATGGGAGGAAGTAGAGAAAGCAAGGAAGAGAAAATTAGCTATGAAATCTGATGATGGGGATGAGGATACTTCAGAACAGAGTGATGAAGATGAAGAAGATGCCTTGCCCTTCGCATGTTTTATTTGTCGCGAGCCTTTTGTGGATCCTGTTGTGACCAAGTGCAAGCATTACTTCTGTGAGCATTGTGCACTGAAGCACCATGCAAAGAATAAGAAATGCTTCGTTTGCAACCAGCCTACGCTTGGAATCTTCAATACGGCTCATGAGATACGCAAAAGGATGGCAGAGAGTAAATAA 1197 45.28 MKVSDSPFLFTYYLHADTTKQIPAANSDSRQTPGKQVDPAAALIDPRTTSSEREDPQRRGLLICHLLIELVLLSYTMTDTGENQPPEQVCSFFRKPTKNKNIRKRTVDEDEEDDSKTETLLLQNQKKAPKTESKLYFSSGPSKSSLSNESNVEPNKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKSDDGDEDTSEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNTAHEIRKRMAESK 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10602672 10655368 - Lsi08G003850.1 Lsi08g00385 668311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00385 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 337 396 IPR013083 -
Lsi08g00385 398 MobiDBLite consensus disorder prediction 103 155 - -
Lsi08g00385 398 MobiDBLite consensus disorder prediction 121 155 - -
Lsi08g00385 398 PANTHER ZINC FINGER PROTEIN 183 77 397 IPR039971 -
Lsi08g00385 398 SUPERFAMILY RING/U-box 338 382 - -
Lsi08g00385 398 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 287 IPR000571 GO:0046872
Lsi08g00385 398 SMART ring_2 339 376 IPR001841 -
Lsi08g00385 398 ProSiteProfiles Zinc finger RING-type profile. 339 377 IPR001841 -
Lsi08g00385 398 MobiDBLite consensus disorder prediction 310 330 - -
Lsi08g00385 398 Gene3D - 259 293 - -
Lsi08g00385 398 ProSitePatterns Zinc finger RING-type signature. 354 363 IPR017907 -
Lsi08g00385 398 SMART c3hfinal6 261 288 IPR000571 GO:0046872
Lsi08g00385 398 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 77 397 - -
Lsi08g00385 398 CDD RING-HC_RNF113A_B 337 377 - -
Lsi08g00385 398 Pfam Zinc finger, C3HC4 type (RING finger) 338 380 - -
Lsi08g00385 398 SUPERFAMILY CCCH zinc finger 260 292 IPR036855 GO:0046872
Lsi08g00385 398 ProSiteProfiles Zinc finger C3H1-type profile. 261 289 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00385 Lsi-Chr8:10602672 Lsi01g01051 Lsi-Chr1:8701448 7.15E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25722 PF13920 zf-C3HC4_3 7.40E-09 CL0229 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00385 K13127 - csv:101221334 612.453