Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi08g00393 | ATGGTTTACTCCGACAAAATGCAAGAAATTGCAGCCAAAATGGGTTTCACACTCTCCGATTTCGCCGATACTTTGGAACAAGAACGCCTCAAAGTCCTCATGTTTCAGCGCGAGCTCCCTCTCTGTTTGCAGCTCGTTTCCCATGCCATTGATTGTTGCAGGCAGCAGTTATCGGAGACTACAACGGAGAATCGTCAATCGGAGTGCTCTGAGCAGACTTCCAGTGACATGGGTCCGGTTCTTGAGGAGTTCATTCCGATAAACAGAAATGGGGTTTCTGATTTTGAACAAACGGAGAAGAACAAGAGTAACGATGAGTCTGATTTAAACAATTTGAATTTAGCTCCGTCTGATTGGCTCAGATCTGCTCAGCTTTGGAATCAGACTTCAGATCCTCCACCCCTGAATCAGGACCTGCCCGAGAACACGCCGGTTGTTGAGGTCCACAGAAATGGCGGCGCTTTCCGGCCGTTTCAGAAGGAGAAAACCGGTGGCGGAGGCGGTGGAGGTGGGACATCGTCGTCTTCAGCTCCGGCTCCGGCTGCGGAAACGAGCTCGACGACGGAGACGGGGTCAGGCGGAAGTAGCCGACGGGAAGAGAAGGAAGCGCAGAATCAGAGGAAACAAAGACGTTGCTGGTCGCCGGAGCTGCACCGGCGGTTCCTTCATGCGCTTCAACAGCTCGGAGGCTCCCATGTGGCGACGCCGAAGCAAATAAGGGAATTGATGAAGGTGGATGGTCTTACCAACGACGAAGTGAAAAGTCATCTACAGAAATATCGTCTGCACACGAGACGGCCAACTCCGACGATTCACAACAACGAGAGCGGCCACGCGCCTCAGTTCCTGGTGGTCGGCGGCATATGGGTACCGGCGGCCGAGTACGCCGCCGTGTCCACCACCACTTCCTCGGGAGAAGCAGTCAGCGCCGCTACCACAAATGGAATTTATGCACCGGTGGTAGCAGCGGCAGCGCCGCAGCCATTACCCAGCACAGTCCAAAAGCCCAAACCCAAGATCCCTTCCTCCGCCGCCGTCAAGGCCGTGGATTGTAATTCTCCGACTACATCTTCCTCTACTCATACGTCGTCAGTTTCACCAGCTGCTTCTTGA | 1113 | 54.09 | MVYSDKMQEIAAKMGFTLSDFADTLEQERLKVLMFQRELPLCLQLVSHAIDCCRQQLSETTTENRQSECSEQTSSDMGPVLEEFIPINRNGVSDFEQTEKNKSNDESDLNNLNLAPSDWLRSAQLWNQTSDPPPLNQDLPENTPVVEVHRNGGAFRPFQKEKTGGGGGGGGTSSSSAPAPAAETSSTTETGSGGSSRREEKEAQNQRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPTPTIHNNESGHAPQFLVVGGIWVPAAEYAAVSTTTSSGEAVSAATTNGIYAPVVAAAAPQPLPSTVQKPKPKIPSSAAVKAVDCNSPTTSSSTHTSSVSPAAS | 370 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 10882331 | 10885673 | + | Lsi08G003930.1 | Lsi08g00393 | 668319 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi08g00393 | 370 | PANTHER | TRANSCRIPTION FACTOR HHO2 | 18 | 364 | - | - | |
Lsi08g00393 | 370 | Pfam | Myb-like DNA-binding domain | 210 | 261 | IPR001005 | - | |
Lsi08g00393 | 370 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 208 | 263 | IPR006447 | GO:0003677 | |
Lsi08g00393 | 370 | MobiDBLite | consensus disorder prediction | 153 | 212 | - | - | |
Lsi08g00393 | 370 | MobiDBLite | consensus disorder prediction | 348 | 370 | - | - | |
Lsi08g00393 | 370 | SUPERFAMILY | Homeodomain-like | 206 | 266 | IPR009057 | - | |
Lsi08g00393 | 370 | MobiDBLite | consensus disorder prediction | 328 | 370 | - | - | |
Lsi08g00393 | 370 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 205 | 265 | IPR017930 | - | |
Lsi08g00393 | 370 | Coils | Coil | 95 | 115 | - | - | |
Lsi08g00393 | 370 | MobiDBLite | consensus disorder prediction | 194 | 212 | - | - | |
Lsi08g00393 | 370 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR | 18 | 364 | IPR044787 | GO:0003700|GO:0006355 | |
Lsi08g00393 | 370 | MobiDBLite | consensus disorder prediction | 168 | 193 | - | - | |
Lsi08g00393 | 370 | Gene3D | - | 207 | 265 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g00999 | Lsi-Chr1:8248442 | Lsi08g00393 | Lsi-Chr8:10882331 | 5.19E-32 | dispersed | |
Lsi04g00286 | Lsi-Chr4:2865253 | Lsi08g00393 | Lsi-Chr8:10882331 | 5.84E-105 | dispersed | |
Lsi08g00393 | Lsi-Chr8:10882331 | Lsi11g00287 | Lsi-Chr11:2986019 | 5.98E-14 | dispersed | |
Lsi08g00393 | Lsi-Chr8:10882331 | Lsi11g01029 | Lsi-Chr11:17644304 | 5.08E-47 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25723 | PF00249 | Myb_DNA-binding | 1.60E-06 | CL0123 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi08g00393 | - | - | csv:101210056 | 573.933 |