Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00393 ATGGTTTACTCCGACAAAATGCAAGAAATTGCAGCCAAAATGGGTTTCACACTCTCCGATTTCGCCGATACTTTGGAACAAGAACGCCTCAAAGTCCTCATGTTTCAGCGCGAGCTCCCTCTCTGTTTGCAGCTCGTTTCCCATGCCATTGATTGTTGCAGGCAGCAGTTATCGGAGACTACAACGGAGAATCGTCAATCGGAGTGCTCTGAGCAGACTTCCAGTGACATGGGTCCGGTTCTTGAGGAGTTCATTCCGATAAACAGAAATGGGGTTTCTGATTTTGAACAAACGGAGAAGAACAAGAGTAACGATGAGTCTGATTTAAACAATTTGAATTTAGCTCCGTCTGATTGGCTCAGATCTGCTCAGCTTTGGAATCAGACTTCAGATCCTCCACCCCTGAATCAGGACCTGCCCGAGAACACGCCGGTTGTTGAGGTCCACAGAAATGGCGGCGCTTTCCGGCCGTTTCAGAAGGAGAAAACCGGTGGCGGAGGCGGTGGAGGTGGGACATCGTCGTCTTCAGCTCCGGCTCCGGCTGCGGAAACGAGCTCGACGACGGAGACGGGGTCAGGCGGAAGTAGCCGACGGGAAGAGAAGGAAGCGCAGAATCAGAGGAAACAAAGACGTTGCTGGTCGCCGGAGCTGCACCGGCGGTTCCTTCATGCGCTTCAACAGCTCGGAGGCTCCCATGTGGCGACGCCGAAGCAAATAAGGGAATTGATGAAGGTGGATGGTCTTACCAACGACGAAGTGAAAAGTCATCTACAGAAATATCGTCTGCACACGAGACGGCCAACTCCGACGATTCACAACAACGAGAGCGGCCACGCGCCTCAGTTCCTGGTGGTCGGCGGCATATGGGTACCGGCGGCCGAGTACGCCGCCGTGTCCACCACCACTTCCTCGGGAGAAGCAGTCAGCGCCGCTACCACAAATGGAATTTATGCACCGGTGGTAGCAGCGGCAGCGCCGCAGCCATTACCCAGCACAGTCCAAAAGCCCAAACCCAAGATCCCTTCCTCCGCCGCCGTCAAGGCCGTGGATTGTAATTCTCCGACTACATCTTCCTCTACTCATACGTCGTCAGTTTCACCAGCTGCTTCTTGA 1113 54.09 MVYSDKMQEIAAKMGFTLSDFADTLEQERLKVLMFQRELPLCLQLVSHAIDCCRQQLSETTTENRQSECSEQTSSDMGPVLEEFIPINRNGVSDFEQTEKNKSNDESDLNNLNLAPSDWLRSAQLWNQTSDPPPLNQDLPENTPVVEVHRNGGAFRPFQKEKTGGGGGGGGTSSSSAPAPAAETSSTTETGSGGSSRREEKEAQNQRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPTPTIHNNESGHAPQFLVVGGIWVPAAEYAAVSTTTSSGEAVSAATTNGIYAPVVAAAAPQPLPSTVQKPKPKIPSSAAVKAVDCNSPTTSSSTHTSSVSPAAS 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10882331 10885673 + Lsi08G003930.1 Lsi08g00393 668319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00393 370 PANTHER TRANSCRIPTION FACTOR HHO2 18 364 - -
Lsi08g00393 370 Pfam Myb-like DNA-binding domain 210 261 IPR001005 -
Lsi08g00393 370 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 208 263 IPR006447 GO:0003677
Lsi08g00393 370 MobiDBLite consensus disorder prediction 153 212 - -
Lsi08g00393 370 MobiDBLite consensus disorder prediction 348 370 - -
Lsi08g00393 370 SUPERFAMILY Homeodomain-like 206 266 IPR009057 -
Lsi08g00393 370 MobiDBLite consensus disorder prediction 328 370 - -
Lsi08g00393 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 265 IPR017930 -
Lsi08g00393 370 Coils Coil 95 115 - -
Lsi08g00393 370 MobiDBLite consensus disorder prediction 194 212 - -
Lsi08g00393 370 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 18 364 IPR044787 GO:0003700|GO:0006355
Lsi08g00393 370 MobiDBLite consensus disorder prediction 168 193 - -
Lsi08g00393 370 Gene3D - 207 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00999 Lsi-Chr1:8248442 Lsi08g00393 Lsi-Chr8:10882331 5.19E-32 dispersed
Lsi04g00286 Lsi-Chr4:2865253 Lsi08g00393 Lsi-Chr8:10882331 5.84E-105 dispersed
Lsi08g00393 Lsi-Chr8:10882331 Lsi11g00287 Lsi-Chr11:2986019 5.98E-14 dispersed
Lsi08g00393 Lsi-Chr8:10882331 Lsi11g01029 Lsi-Chr11:17644304 5.08E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25723 PF00249 Myb_DNA-binding 1.60E-06 CL0123 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00393 - - csv:101210056 573.933