Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00393 ATGGTTTACTCCGACAAAATGCAAGAAATTGCAGCCAAAATGGGTTTCACACTCTCCGATTTCGCCGATACTTTGGAACAAGAACGCCTCAAAGTCCTCATGTTTCAGCGCGAGCTCCCTCTCTGTTTGCAGCTCGTTTCCCATGCCATTGATTGTTGCAGGCAGCAGTTATCGGAGACTACAACGGAGAATCGTCAATCGGAGTGCTCTGAGCAGACTTCCAGTGACATGGGTCCGGTTCTTGAGGAGTTCATTCCGATAAACAGAAATGGGGTTTCTGATTTTGAACAAACGGAGAAGAACAAGAGTAACGATGAGTCTGATTTAAACAATTTGAATTTAGCTCCGTCTGATTGGCTCAGATCTGCTCAGCTTTGGAATCAGACTTCAGATCCTCCACCCCTGAATCAGGACCTGCCCGAGAACACGCCGGTTGTTGAGGTCCACAGAAATGGCGGCGCTTTCCGGCCGTTTCAGAAGGAGAAAACCGGTGGCGGAGGCGGTGGAGGTGGGACATCGTCGTCTTCAGCTCCGGCTCCGGCTGCGGAAACGAGCTCGACGACGGAGACGGGGTCAGGCGGAAGTAGCCGACGGGAAGAGAAGGAAGCGCAGAATCAGAGGAAACAAAGACGTTGCTGGTCGCCGGAGCTGCACCGGCGGTTCCTTCATGCGCTTCAACAGCTCGGAGGCTCCCATGTGGCGACGCCGAAGCAAATAAGGGAATTGATGAAGGTGGATGGTCTTACCAACGACGAAGTGAAAAGTCATCTACAGAAATATCGTCTGCACACGAGACGGCCAACTCCGACGATTCACAACAACGAGAGCGGCCACGCGCCTCAGTTCCTGGTGGTCGGCGGCATATGGGTACCGGCGGCCGAGTACGCCGCCGTGTCCACCACCACTTCCTCGGGAGAAGCAGTCAGCGCCGCTACCACAAATGGAATTTATGCACCGGTGGTAGCAGCGGCAGCGCCGCAGCCATTACCCAGCACAGTCCAAAAGCCCAAACCCAAGATCCCTTCCTCCGCCGCCGTCAAGGCCGTGGATTGTAATTCTCCGACTACATCTTCCTCTACTCATACGTCGTCAGTTTCACCAGCTGCTTCTTGA 1113 54.09 MVYSDKMQEIAAKMGFTLSDFADTLEQERLKVLMFQRELPLCLQLVSHAIDCCRQQLSETTTENRQSECSEQTSSDMGPVLEEFIPINRNGVSDFEQTEKNKSNDESDLNNLNLAPSDWLRSAQLWNQTSDPPPLNQDLPENTPVVEVHRNGGAFRPFQKEKTGGGGGGGGTSSSSAPAPAAETSSTTETGSGGSSRREEKEAQNQRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPTPTIHNNESGHAPQFLVVGGIWVPAAEYAAVSTTTSSGEAVSAATTNGIYAPVVAAAAPQPLPSTVQKPKPKIPSSAAVKAVDCNSPTTSSSTHTSSVSPAAS 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10882331 10885673 + Lsi08G003930.1 Lsi08g00393 668319

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00393 370 PANTHER TRANSCRIPTION FACTOR HHO2 18 364 - -
Lsi08g00393 370 Pfam Myb-like DNA-binding domain 210 261 IPR001005 -
Lsi08g00393 370 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 208 263 IPR006447 GO:0003677
Lsi08g00393 370 MobiDBLite consensus disorder prediction 153 212 - -
Lsi08g00393 370 MobiDBLite consensus disorder prediction 348 370 - -
Lsi08g00393 370 SUPERFAMILY Homeodomain-like 206 266 IPR009057 -
Lsi08g00393 370 MobiDBLite consensus disorder prediction 328 370 - -
Lsi08g00393 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 265 IPR017930 -
Lsi08g00393 370 Coils Coil 95 115 - -
Lsi08g00393 370 MobiDBLite consensus disorder prediction 194 212 - -
Lsi08g00393 370 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 18 364 IPR044787 GO:0003700|GO:0006355
Lsi08g00393 370 MobiDBLite consensus disorder prediction 168 193 - -
Lsi08g00393 370 Gene3D - 207 265 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00393 - - - csv:101210056 573.933
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00999 Lsi-Chr1:8248442 Lsi08g00393 Lsi-Chr8:10882331 5.19E-32 dispersed
Lsi04g00286 Lsi-Chr4:2865253 Lsi08g00393 Lsi-Chr8:10882331 5.84E-105 dispersed
Lsi08g00393 Lsi-Chr8:10882331 Lsi11g00287 Lsi-Chr11:2986019 5.98E-14 dispersed
Lsi08g00393 Lsi-Chr8:10882331 Lsi11g01029 Lsi-Chr11:17644304 5.08E-47 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi05g01838 . 7 266 G2-like Transcription Factor Family AT3G24120 58.1 8.2e-68 254.2
Lsi11g01586 . 16 173 G2-like Transcription Factor Family AT3G24120 63.0 4.1e-43 172.2
Lsi10g01509 . 22 167 G2-like Transcription Factor Family AT3G24120 56.6 3.4e-37 152.5
Lsi01g00519 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.4e-37 152.5
Lsi04g00286 . 19 257 G2-like Transcription Factor Family AT1G25550 54.9 6.3e-54 208.0
Lsi08g00393 . 20 258 G2-like Transcription Factor Family AT1G25550 54.1 3.8e-51 198.7
Lsi02g01341 . 1 269 G2-like Transcription Factor Family AT3G46640 52.2 1.5e-62 236.9
Lsi03g01637 . 1 286 G2-like Transcription Factor Family AT5G05090 55.6 7.9e-70 260.8
Lsi05g01838 . 7 314 G2-like Transcription Factor Family AT4G13640 53.6 6.1e-55 211.5
Lsi05g01838 . 7 266 G2-like Transcription Factor Family AT3G24120 58.1 8.2e-68 254.2
Lsi11g01586 . 16 173 G2-like Transcription Factor Family AT3G24120 63.0 4.1e-43 172.2
Lsi10g01509 . 22 167 G2-like Transcription Factor Family AT3G24120 56.6 3.4e-37 152.5
Lsi01g00519 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.4e-37 152.5
Lsi11g01586 . 1 387 G2-like Transcription Factor Family AT1G79430 52.6 2.1e-81 299.7
Lsi10g01509 . 1 166 G2-like Transcription Factor Family AT1G79430 71.0 3.1e-61 232.6
Lsi03g01290 . 70 292 G2-like Transcription Factor Family AT5G18240 53.3 6.4e-50 194.9
Lsi01g00520 . 84 343 G2-like Transcription Factor Family AT2G01060 56.8 2.5e-51 199.1
Lsi03g01637 . 1 286 G2-like Transcription Factor Family AT3G10760 56.9 5.6e-81 298.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004323 2 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25723 PF00249 Myb_DNA-binding 1.60E-06 CL0123 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00393 Lsi_Chr08 FPKM 0.0 0.0 0.0 0.0 0.290536 0.0 0.555838 0.0 0.756711 0.724192