Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00395 ATGCAGAGCTTTGAAAACCCAGAACAGTTCTATGCTCATTCGTCTTCTTCTTCTTCAATCTTTCTCCGGGGAGACGACAGTGGGCGATTTCTTACGCGTTTTCTTCCGGATATTGAGGAACTTCAACAATCCGCTGCTGCTATTGCTGCTTTTCATCAAGATGATGCTGTTGATTTAAGCCCAAGCTCTGTTTTCAGTTTAAAATCGACCCACAATACAGCTTTTCCAATCCACCTACCGTACGGGAACACGGATGTGGGTTCAATAGGACGAACAGGGTATTTAGACACGGGACAGGAATTGATGAGGTTGAAGAGGCTGGCTCCGCCGCAGTCGGTGGCGGTGACAGTGGCAGCTTCGTCATCGTTGGGAAACGGGAGCTTTGAGAACTGGGGAGAGTCAGCCATGGCAGATAACAGCCAGCAGACTGACACTTCCACAGACATCGACACCGATGAAAGAAACCAGTTTCAAGGAGCTGCACATGGAGCTCTCATGGCGGTGGACTCCATGGATCAATCTAAACCAAAATCTGCAGATCAGAAGACTCTTCGTAGACTTGCCCAGAATCGAGAAGCAGCCAGGAAGAGTCGACTGAGGAAGAAAGCATATGTCCAGCAGCTGGAGAATAGTCGACAGAGGCTTGCGCAGCTAGAGCAGGAGCTTCATCGAGCACGCCAACAGGGAATTTTTGTGGCTTCTGGGGCAGGAGACCATTGTGCATCAATGGCAGGAAATGGTGCCTTGGCATTTGATCTCGACTATGCACGGTGGCTTGACGAGCATCAACGCCTCATCAATGATTTGAGAGCATCCGCAAATTCTCAGTTGGGGGACGACGAATTGAGATTTCTTGTCGATGGGGTGATGGCACATTATGATGAACTTTTCAAGCTCAAAAGTGTAGGTGCCAAGGCTGACGTATTCCACATTCTTTCGGGCATGTGGAAGAGTCCTGCTGAGAGGTGTTTCATGTGGCTGGGAGGATTCCGTTCATCCGAGCTTCTAAAGATAGTAGGAAGCCATTTGGAGCCTTTAACAGATCAGCAGTTGATGGGTATCTGCAATTTGCAGCAATCTTCCCAACAAGCTGAAGATGCATTGTCACAAGGGATTGAAGCTTTGCAACAATCTCTTGTAGAAACTCTTTCCACTGCTTCTTTAGGTCCAGCCAGTTCAGGAAATGTTGCTGATTACATGGGCCAAATGGCAATCGCAATGAGCAAGCTAACTACGCTCGAGAACTTTCTACATCAGGCTGATCTTCTGAGGCAGCAAACACTCCAACAGATGCATCGGATATTAACTACTCGTCAAGCTGCACGAGCGCTACTTGTGATCAGCGATTACATTTCACGTCTTCGAGCTCTCAGTTCTCTGTGGTTAGCACGACCAAGAGATTGA 1404 48.15 MQSFENPEQFYAHSSSSSSIFLRGDDSGRFLTRFLPDIEELQQSAAAIAAFHQDDAVDLSPSSVFSLKSTHNTAFPIHLPYGNTDVGSIGRTGYLDTGQELMRLKRLAPPQSVAVTVAASSSLGNGSFENWGESAMADNSQQTDTSTDIDTDERNQFQGAAHGALMAVDSMDQSKPKSADQKTLRRLAQNREAARKSRLRKKAYVQQLENSRQRLAQLEQELHRARQQGIFVASGAGDHCASMAGNGALAFDLDYARWLDEHQRLINDLRASANSQLGDDELRFLVDGVMAHYDELFKLKSVGAKADVFHILSGMWKSPAERCFMWLGGFRSSELLKIVGSHLEPLTDQQLMGICNLQQSSQQAEDALSQGIEALQQSLVETLSTASLGPASSGNVADYMGQMAIAMSKLTTLENFLHQADLLRQQTLQQMHRILTTRQAARALLVISDYISRLRALSSLWLARPRD 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10972139 10975663 + Lsi08G003950.1 Lsi08g00395 668321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00395 467 Pfam bZIP transcription factor 181 221 IPR004827 GO:0003700|GO:0006355
Lsi08g00395 467 Pfam Seed dormancy control 266 339 IPR025422 GO:0006351|GO:0043565
Lsi08g00395 467 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 185 200 IPR004827 GO:0003700|GO:0006355
Lsi08g00395 467 Gene3D - 181 230 - -
Lsi08g00395 467 Coils Coil 201 228 - -
Lsi08g00395 467 ProSiteProfiles DOG1 domain profile. 248 464 IPR025422 GO:0006351|GO:0043565
Lsi08g00395 467 PANTHER TRANSCRIPTION FACTOR TGA9 51 467 - -
Lsi08g00395 467 PANTHER TRANSCRIPTION FACTOR PERIANTHIA 51 467 - -
Lsi08g00395 467 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 180 224 IPR004827 GO:0003700|GO:0006355
Lsi08g00395 467 SUPERFAMILY Leucine zipper domain 182 225 IPR046347 GO:0003700|GO:0006355
Lsi08g00395 467 SMART brlzneu 178 249 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00395 Lsi-Chr8:10972139 Lsi08g00928 Lsi-Chr8:17665259 2.58E-143 dispersed
Lsi08g00395 Lsi-Chr8:10972139 Lsi10g01166 Lsi-Chr10:15933908 3.92E-57 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25724 PF14144 DOG1 2.40E-29 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00395 K14431 - csv:101210308 832.017