Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00412 ATGAGGGGAGCTATTGAGCAATCCACTCCCGAAAGGAACGAGGATGGCGACAAGGAGAAGAAGAAGAAACGCCGATCCAATCGCCGATCTAAGCAGAACGCCTCTCTTTCCACTTCAGCGTCTTGCACTTCAGTCAATGGAATACTGGGGGAAGCATCAGAGTGCATGGGAAATGGTAGAATAGATGCTAACTTAACATCACCCTCAAATTATTCTTCTTTGACACAACAGGCATATCAATCAAATCATCAAATAGAGCATGGTTTGACCAGAAAAAATAAGATTGCCTTTAGTTCTTTGCCCCCTCTTCATATTAGTGAACAAGCAGATTTATCTGCATCGCAAAATTCAATGAATCAAAATCTTCATTCATTGGATGCTGGTGGAAGGATTATAAAATCATGTCCTGAACAGATTGCTTGTGGAAGGAATTCAGGGATATCTTTAAACCAGCATTCACCTCCTGCTGATGTAACTGAACATAACACACAAAGGAAATATTTTCCTTCTCACTGGTCCATGGATGATGTCAACGAAGGATTACAGAAAGGGGACATATTTAAAGCTTTATTTCGTGTTAATGCCCACAATAGAATTGAGGCCTACTGTAAAATTGACGGACTTCCAGTTGATGTTTTAATCAACGGAATTGCATCTCAGAACAGAGCTGTGGAAGGAGACATAGTTGCAATTAAGGTGGATCCTTTTACGTCATGGACTAGGATGAAGGGCACTAGTGAGACCCATAACAATATGAATGCAATGGAAGATGCTAGCATACCTGCTGAGGCAACTGAAAAGGACAACCATAATTGTAAAGGCAAAAATAAAGTTGACACCAATGTTAAGTCTGAAAGTCTTAGGAGTTCCTCTTTATCTGATAAGAGGTGTTGTAGTGAGGTCAAAGTTTTGGATGGAATTGCTTGTGATGATCTTTTATCAAATTACGAGCAATGTGATGTATTTGAGTCATCAGTTATGGATCCTTCCCAAGAACATTATTCTAGTAACCAAGATGATGTGTCTAAGGCCATCGGGAGGATCTGTGCAATGATTAATTTATATCCTGCAAAAAGACCGACAGGCAGGGTAGTAACCATCCTAGAAAAGTCTCGACTGCGAGAAACTATTGTTGGCCATCTTAATGTTAAGAAGTTCATCTCCTTCCAGGAGATTCATATGAAAGAGAATACAAAATCATGTTTATCACCATCGCATAATTGTGGATATGTCCAGTTGATCCCCAATGATGCAAGATTCCCAACAATGATGGTTCTTGCAGGAGATTTACCTGACTGCATTAAGAGGAGATTGGACAATGGTGATGTAACGGTTGAAAGTGAGCTGGTGGCTGCACGAATTCATGAATGGGTTAAAGAGAGTTCAGCTCCACATGCACATGTCTTGCATGTTTTAGGAAGGGGGAATGAAGTAGAGTCTCATATTGATGCTATTTTATTTGAAAATGCAATTCGTACATGTGAATTCTCTCATGAATCACTGTCTTGCATCCCTCATACTCCTTGGAAGATCCCACAAGAGGAACTTCAATGCAGAAGAGATATAAGAAATTTATGTATATTTACTATTGATCCTTCCTCTGCCTCGGATCTTGATGATGCTTTATCAGTTCAAAAATTAGCCAATGGCATCTTCAGAGTTGGCATTCATATTGCTGATGTATCACATTTTGTATTGCCAGACACTGCCTTAGATAAGGAAGCTCAAATCCGATCAACGAGTGTTTATCTTTTGCAGCGCAAGATACCAATGTTGCCACCATTACTCTCTGAGAATATAGGTTCACTTAACCCTGGAGTGGATAGACTTGCGTTTTCATTGTTTTTGGACATAAATAATTATGGAGATGTTAAAGATTGTTGGATTGGACGTACTGTGATATGCTCTTGTTGCAAACTCTCATATGAACATGCTCAGGACATTATTGATGGATTAGTTGATTCTGATAGTTCAAAGATTTTAGGGAATAATTGTCCCCAGTTGCATGGTCAGTTTGCATGGCACGATGTCATTTCATCTGTTAAACTTCTTCATGAAATTTCGAAAACTCTGAAGGAGAAGAGATTTAGAGATGGGGCTTTGCGGCTTGAGAATTCTAAGATAATATATTTATATGATGAATATGGAATTCCATATGATAGTACGTTTTATGAGCAAAAGGATTCAAATTTTCTTGTTGAGGAGTTCATGCTTTTGGCAAACACAACTGTGGCCGAAGTTATATCCAGAACTTTTCCTGACAGTGCATTATTGAGAAGGCATCCAGAACCTATATTGAGGAAGCTCAGAGAATTTGAATCATTTTGTTCTAAGCATGGTTTTGAACTTGACACATCCTCTTCAGTCCAGTTCCAACAGTCATTAGAGCAGATAAGGATAAAACTTCATGATGATCCTTTGCTGTTCGATATTCTCACATCTTATGCTACGAGGCCTATGCAATTAGCAGCTTATTTCTGTAGTGGAGAGTTAGAAGATGGCGAAAAGGGGAGTCATTATGCACTGGCTGTCCCTCTATACACACATTTCACTTCACCATTGCGACGGTATCCTGATATTGTAGTCCATCGTACACTTGCAGCAGCAATTGAGGCTGAGAAGTTGTATTTGAAGCACCAAGGAATCATACAGAAAGTTAATAGTGATGAGCAGATGAGATGTTTTACTGGCATTTATTTTGACAAAGATGCTGCTGACTCCTTAGAAGGTAGAGAAGCATTATCATTTGCGGCATTGAGGCATGGTGTTCCATGCTCAAAATTACTTTCAGATGTTGCTCTGCACTGCAATAACAGAAAATTGGCTAGTAAGCATGTTGCGGATGGTTGTGATAAACTCTACATGTGGGCTCTTTTGAAGAAAAAAAAGATTTTGTTCTCAGATGCAAGGGTATTGGGCCTTGGTCCAAGATTTATGTCTGTGTATATACAGAAGCTGGCTATTGAGCGAAGAATATACTACGATGAAGTTGAAGGTTTGGCAGTTGAATGGCTTGATACTACATCTACACTAGTGCTTAGTTTTTTTGGTACTAGGCGCTCACATAGGAGTAGAGGTTCAATTAAGTGGAAGGCATTGGAAGATGTTGCACTAGTTGTTTCTCCTTGCGACCAGAATGTTCATCAGAGGTCGCTTGGAGTGAGTCCTAGTGAGTTGGATGGAGCAAGCACAGGGGTTGCTGCTGTGGAACACGAGTCCAATTTGAAATCTCATGTTTCAAATACTGGAGTTGACCCTGCAGTTTTCCCCCTCACAGTAAGGCTCCTTTCGACAATACCAGTAGCACTTCACGCAGTTGGTGGGGATGATGGACCCATCGACATTGGGGTTAGGCTATACATGAGCTCATATTTAAGGTAA 3381 40.05 MRGAIEQSTPERNEDGDKEKKKKRRSNRRSKQNASLSTSASCTSVNGILGEASECMGNGRIDANLTSPSNYSSLTQQAYQSNHQIEHGLTRKNKIAFSSLPPLHISEQADLSASQNSMNQNLHSLDAGGRIIKSCPEQIACGRNSGISLNQHSPPADVTEHNTQRKYFPSHWSMDDVNEGLQKGDIFKALFRVNAHNRIEAYCKIDGLPVDVLINGIASQNRAVEGDIVAIKVDPFTSWTRMKGTSETHNNMNAMEDASIPAEATEKDNHNCKGKNKVDTNVKSESLRSSSLSDKRCCSEVKVLDGIACDDLLSNYEQCDVFESSVMDPSQEHYSSNQDDVSKAIGRICAMINLYPAKRPTGRVVTILEKSRLRETIVGHLNVKKFISFQEIHMKENTKSCLSPSHNCGYVQLIPNDARFPTMMVLAGDLPDCIKRRLDNGDVTVESELVAARIHEWVKESSAPHAHVLHVLGRGNEVESHIDAILFENAIRTCEFSHESLSCIPHTPWKIPQEELQCRRDIRNLCIFTIDPSSASDLDDALSVQKLANGIFRVGIHIADVSHFVLPDTALDKEAQIRSTSVYLLQRKIPMLPPLLSENIGSLNPGVDRLAFSLFLDINNYGDVKDCWIGRTVICSCCKLSYEHAQDIIDGLVDSDSSKILGNNCPQLHGQFAWHDVISSVKLLHEISKTLKEKRFRDGALRLENSKIIYLYDEYGIPYDSTFYEQKDSNFLVEEFMLLANTTVAEVISRTFPDSALLRRHPEPILRKLREFESFCSKHGFELDTSSSVQFQQSLEQIRIKLHDDPLLFDILTSYATRPMQLAAYFCSGELEDGEKGSHYALAVPLYTHFTSPLRRYPDIVVHRTLAAAIEAEKLYLKHQGIIQKVNSDEQMRCFTGIYFDKDAADSLEGREALSFAALRHGVPCSKLLSDVALHCNNRKLASKHVADGCDKLYMWALLKKKKILFSDARVLGLGPRFMSVYIQKLAIERRIYYDEVEGLAVEWLDTTSTLVLSFFGTRRSHRSRGSIKWKALEDVALVVSPCDQNVHQRSLGVSPSELDGASTGVAAVEHESNLKSHVSNTGVDPAVFPLTVRLLSTIPVALHAVGGDDGPIDIGVRLYMSSYLR 1126
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11544273 11550469 + Lsi08G004120.1 Lsi08g00412 668338

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00412 1126 MobiDBLite consensus disorder prediction 1 40 - -
Lsi08g00412 1126 PANTHER RIBONUCLEASE 23 1124 - -
Lsi08g00412 1126 ProSitePatterns Ribonuclease II family signature. 839 863 IPR022966 -
Lsi08g00412 1126 SMART RNB_2 519 872 IPR001900 GO:0003723|GO:0004540
Lsi08g00412 1126 Gene3D - 394 477 - -
Lsi08g00412 1126 SUPERFAMILY Nucleic acid-binding proteins 165 370 IPR012340 -
Lsi08g00412 1126 SUPERFAMILY Nucleic acid-binding proteins 361 492 IPR012340 -
Lsi08g00412 1126 MobiDBLite consensus disorder prediction 7 21 - -
Lsi08g00412 1126 Pfam Dis3-like cold-shock domain 2 (CSD2) 410 489 IPR041505 -
Lsi08g00412 1126 Hamap DIS3-like exonuclease 2 [DIS3L2]. 10 1101 IPR028591 GO:0000175|GO:0034427
Lsi08g00412 1126 Gene3D - 156 261 - -
Lsi08g00412 1126 PANTHER DIS3-LIKE EXONUCLEASE 2 23 1124 - -
Lsi08g00412 1126 Pfam RNB domain 519 870 IPR001900 GO:0003723|GO:0004540
Lsi08g00412 1126 SUPERFAMILY Nucleic acid-binding proteins 480 961 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00412 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-] - csv:101205097 1959.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01432 Lsi-Chr1:12484707 Lsi08g00412 Lsi-Chr8:11544273 4.01E-15 dispersed
Lsi08g00412 Lsi-Chr8:11544273 Lsi11g01027 Lsi-Chr11:17449320 9.95E-59 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g297 . . . . . . . . Cmo04g02458 Cmo15g00709 . . . . Sed11g2304 . . Bhi04g02509 Tan11g0076 Cmetu03g1361 . . . Lcy10g2336 Cla08g00563 Cam08g0980 . Cco08g0679 Clacu08g0688 . Cre08g0502 . . Cone17ag1271 . . . . . Blo17g00182 . . Bda01g01418 Bpe02g01633 Bpe14g00376 Bma01g00828 Bma02g00223 . . . . . Car04g02276 Car15g00639 Cpe01g02038 . . . . . . . . . . . . . . . Lsi08g00412 . Chy03g00355 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004396 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00412 Lsi_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.572397 0.0 0.0 0.0