Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00415 ATGGCCAGCGATCAGCTCCAGCTTCTGACCGTCCTTGACCGTGCAAAGACCCAATTCTACCACTTCACGGCGGTGGTAATCGCCGGAATGGGCTTCTTCACCGATTCCTACGACCTCTTCTGCATCTCTCTCGTCACCAAACTCCTCGGCCGCATTTACTACACCGTCGAAGGCTCCCCCCGTCCCGGAACCCTCCCTCCCGCCATCGCCGCCGCCGTCAACGGCGTCGCCCTCGCCGGCACTCTCGCTGGTCAACTCTTTTTCGGCTGGCTCGGCGACAAGCTCGGCCGGAAGCGCGTCTACGGCCTCACCCTCATCCTCATGGTCGTCTGTTCCATCGCCTCCGGTCTCTCCTTCAGCAGTTCTCCGACCGCCGTGATCACCACTCTCTGTTTCTTCCGATTCTGGCTCGGCTTCGGAATCGGCGGCGACTACCCTTTATCCGCTACCATCATGGCCGAATACTCGAACAAGAAAACCCGAGGCGCCTTCATCGCCGCCGTCTTCGCAATGCAGGGATTCGGAATTCTCGCCGGCGGCACTGTAGCAATTATAATCTCCTTAATTTTCAAGACAGTTTTCAAAGCGCCACCGTACGCGGTGGACGCCGTGAAATCGACTGTTCCAGAAGCGGATTACGTATGGAGAATTATACTAATGTTGGGTTCGTTGCCTGCGCTTTTAACTTACTATTGGCGGATGAAAATGCCCGAAACGCCGCGTTACACTGCCTTGGTTGCAAACGACAATAAGAAAGCTTGTAACGACATGTCGAAAGTGTTGAATTTGGAAATTGGTCAAAATGTGGTAAATGAAACCCAAATGAACACAAATTCCAATTCAAATCCAAATTCATTTGGGTTTTTTAGTAAGAAATTTCTTCAACGACATGGGATTCATCTTTTAGGAACTGCCACTACTTGGTTTTTAATCGACGTGGCATATTATAGCCAAAATTTATTCCAAAAAGACATTTTCAGCGCCGTCGGTTGGTTGCCAGCGCCCAAAACAATGAGTGCTTTAGAAGAGGTTTTCAAAATCGCCAAAGCTCAAACACTTATTGCCCTTTGCGGGACCGTTCCGGGCTACTGGGCCACGGTTCTTCTAATAGACCGGGTTGGTCGGTTTTTTATTCAGGTGGTTGGGTTTTTCTTCATGACGGTTTTTATGTTTGCACTTGCCATTCCTTACCATCATTGGACCGGGAACCATGTGGGGTTTGTTGTTATGTATGGCCTTACTTTTTTCTTTGCTAATTTTGGTCCTAATAGTACTACCTTTGTCGTTCCTGCTGAGATTTTCCCGGCCCGGTTCCGGTCCACTTGTCATGGGATATCGGCCGCGGCTGGAAAAGCCGGGGCTATCGTTGGAGCTTTTGGGTTCTTGTATGCGGCTCAGAGTCAGGATCCGAAGAAGACCGACGCCGGTTACCCGGCCGGGATTGGAATGAGGAATTCTTTGATAATTTTGGGAGTTGTTAATGTGTTTGGATTGCTTTTTACATTTTTGGTTCCGGAATCTAAAGGGAAGTCTTTAGAAGAAATGTCCAAAGAGAATGAAGTTGAAGATCAAGAAGAAGAAGAAGATCAAAAAAGTAAAGAGCAAGCTACTGGAGTTGAACAGGTTTAG 1629 48.93 MASDQLQLLTVLDRAKTQFYHFTAVVIAGMGFFTDSYDLFCISLVTKLLGRIYYTVEGSPRPGTLPPAIAAAVNGVALAGTLAGQLFFGWLGDKLGRKRVYGLTLILMVVCSIASGLSFSSSPTAVITTLCFFRFWLGFGIGGDYPLSATIMAEYSNKKTRGAFIAAVFAMQGFGILAGGTVAIIISLIFKTVFKAPPYAVDAVKSTVPEADYVWRIILMLGSLPALLTYYWRMKMPETPRYTALVANDNKKACNDMSKVLNLEIGQNVVNETQMNTNSNSNPNSFGFFSKKFLQRHGIHLLGTATTWFLIDVAYYSQNLFQKDIFSAVGWLPAPKTMSALEEVFKIAKAQTLIALCGTVPGYWATVLLIDRVGRFFIQVVGFFFMTVFMFALAIPYHHWTGNHVGFVVMYGLTFFFANFGPNSTTFVVPAEIFPARFRSTCHGISAAAGKAGAIVGAFGFLYAAQSQDPKKTDAGYPAGIGMRNSLIILGVVNVFGLLFTFLVPESKGKSLEEMSKENEVEDQEEEEDQKSKEQATGVEQV 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11593853 11595481 - Lsi08G004150.1 Lsi08g00415 668341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00415 542 ProSiteProfiles Major facilitator superfamily (MFS) profile. 24 509 IPR020846 GO:0022857
Lsi08g00415 542 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 3 528 - -
Lsi08g00415 542 Coils Coil 514 534 - -
Lsi08g00415 542 Gene3D MFS general substrate transporter like domains 20 533 IPR036259 -
Lsi08g00415 542 TIGRFAM 2A0109: phosphate:H+ symporter 12 518 IPR004738 GO:0005315|GO:0006817|GO:0016021
Lsi08g00415 542 MobiDBLite consensus disorder prediction 510 542 - -
Lsi08g00415 542 SUPERFAMILY MFS general substrate transporter 12 518 IPR036259 -
Lsi08g00415 542 CDD MFS_PhT 25 508 - -
Lsi08g00415 542 PANTHER PHOSPHATE TRANSPORTER, PUTATIVE-RELATED 3 528 - -
Lsi08g00415 542 Pfam Sugar (and other) transporter 26 517 IPR005828 GO:0016021|GO:0022857|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01727 Lsi-Chr5:24715306 Lsi08g00415 Lsi-Chr8:11593853 0 dispersed
Lsi08g00415 Lsi-Chr8:11593853 Lsi09g01236 Lsi-Chr9:19877147 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00415 K08176 - csv:101205342 956.051