Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00417 ATGGTGAAGAAGGAATTAGCAAATGATGACACTCATTCAACAACACTTTCAACAAGTAAAAAGAAATACAAGGGAGTAAGAATGAGAAGCTGGGGCTCATGGGTTTCTGAAATTAGAGCTCCAAATCAAAAGACAAGAATATGGTTAGGTTCATATTCTACAGCGGAGGCCGCCGCCAGAGCTTACGACGCCGCTCTCTTGTGTCTTAAAGGCTCCTCTGCCAATCTTAATTTTCCAATCTCTTCTTCTTCCTTTGCTCATTTTCATAATTTTCTCTCTTCCAATCATGATGATAATAATGTTATGTCTCCAAAGTCCATTCAAAGAGTTGCTGCCGAAGCTGCCGCGAATACCGCGTTTTTCGATGGCAATGTTGACAATAATACGATGGGATCTAACGATGTTCTACCGTCGTCGCCACCGCCTTCCTCCTCTTCTTCTTCCTCTGTCTCGTCGACGTCGAATAACGATTCATTTATGACGACGGAGCCGTCGTGGTTCAACTTTGATGACATACTCTCCCCTAAGTACGTTGGGCAAATGATGGATGGGACTCTATTTGATCCACCCATTATTGATGATTTTTATGAAGAAAGTGATATTCGTTTATGGAGCTTCTGTTGA 624 42.31 MVKKELANDDTHSTTLSTSKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANLNFPISSSSFAHFHNFLSSNHDDNNVMSPKSIQRVAAEAAANTAFFDGNVDNNTMGSNDVLPSSPPPSSSSSSSVSSTSNNDSFMTTEPSWFNFDDILSPKYVGQMMDGTLFDPPIIDDFYEESDIRLWSFC 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11626324 11626947 - Lsi08G004170.1 Lsi08g00417 668343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00417 207 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Lsi08g00417 207 CDD AP2 21 81 IPR001471 GO:0003700|GO:0006355
Lsi08g00417 207 MobiDBLite consensus disorder prediction 130 156 - -
Lsi08g00417 207 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Lsi08g00417 207 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Lsi08g00417 207 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF014 12 207 - -
Lsi08g00417 207 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 207 - -
Lsi08g00417 207 SUPERFAMILY DNA-binding domain 22 81 IPR016177 GO:0003677
Lsi08g00417 207 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Lsi08g00417 207 Gene3D AP2/ERF domain 21 81 IPR036955 GO:0003700|GO:0006355
Lsi08g00417 207 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00417 Lsi-Chr8:11626324 Lsi06g00359 Lsi-Chr6:3917885 3.21E-27 dispersed
Lsi04g02382 Lsi-Chr4:30957844 Lsi08g00417 Lsi-Chr8:11626324 2.36E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25728 PF00847 AP2 3.90E-12 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00417 - - bhj:120076439 349.362