Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00420 ATGAAGTTTCTCATATTGCTCTCCCTTTTATTATCACTTCTCACTAAGCTAAAGATGATGGGTGAGGATTCTATTGTGAGTAAGTTGAAGCCTTATATTTTAGTGGTGAGCCTACAATTTGGAATCGCAGGCATATATGTAATATGCATGGCCACTCTTACCAAAGGCATGAGTCGTTATGTTTTGATCGTGTATCGAAATGCCATTGCTGCTCTCTTTCTCGCTCCCTTTGCGCTAATCTTCGAAAGGAAAACAAGACCAAAGATGACACTTCCTGTTGCTTTGCAAATTATGGTCTTGGGTTTTCTAGAACCCGTTGTCGATCAAGGGTTTGGTTATCTAGGAATGATGTACACGTCAGCATCATTTACATCGGCCATCATGAACGCTGTGCCCTCTGTTACCTTTATCATTGCAGTTATTTTTCGAATGGAGCGTCTAAATATAACACAAGTACGAGGGGTAGCCAAGGTAATTGGCACTTTGGTGACTTTCGCCGGAGCTTTGGTTATGACACTTTACAAAGGCCCAATTCTCGATTTCTTTTGGACTCAAAAAACCAACCACCACCTTAATGGCGGCGGCGGCGCTACCAATCAGCACTGGTCTATAACAGTGAAGAGATACCCAGCGGAGCTGTCTCTCTCGGCATTGATATGCTTGGCTGGTGCACTTCAAAGCACAGTGATAGCAGTAGCCATAGAGCATCGTGCTAGCGCATGGGCTGGAATAGTTGGATCAGGAATTGCATATTACTTTCAAGCTATAGTTATGAAGACAAGAGGCCCTGTATTTGTGACGGCTTTCAACCCTTTATGTATGATTGTTGTGACTATTATATCCTCCATTGTTCTTGCTGAGAAGATTCATCTTGGAAGCGTTATTGGAGGCATTATCATTGCAATTGGGCTTTACGCAGTGGTTTGGGGCAAAAGCAAGGATTATTCCACCGCCGCCAACCTCCAAAAGCCTAGCACCGCCGTGCCGGAGCTTCCAATTACTGCCTCTCAACTGCCCGCCGAACAAGATGCTCATCTTCAACCTCCAAAATGA 1053 44.35 MKFLILLSLLLSLLTKLKMMGEDSIVSKLKPYILVVSLQFGIAGIYVICMATLTKGMSRYVLIVYRNAIAALFLAPFALIFERKTRPKMTLPVALQIMVLGFLEPVVDQGFGYLGMMYTSASFTSAIMNAVPSVTFIIAVIFRMERLNITQVRGVAKVIGTLVTFAGALVMTLYKGPILDFFWTQKTNHHLNGGGGATNQHWSITVKRYPAELSLSALICLAGALQSTVIAVAIEHRASAWAGIVGSGIAYYFQAIVMKTRGPVFVTAFNPLCMIVVTIISSIVLAEKIHLGSVIGGIIIAIGLYAVVWGKSKDYSTAANLQKPSTAVPELPITASQLPAEQDAHLQPPK 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11705883 11711891 + Lsi08G004200.1 Lsi08g00420 668346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00420 350 SUPERFAMILY Multidrug resistance efflux transporter EmrE 65 173 - -
Lsi08g00420 350 SUPERFAMILY Multidrug resistance efflux transporter EmrE 215 312 - -
Lsi08g00420 350 Pfam EamA-like transporter family 42 171 IPR000620 GO:0016020|GO:0016021
Lsi08g00420 350 Pfam EamA-like transporter family 214 308 IPR000620 GO:0016020|GO:0016021
Lsi08g00420 350 PANTHER WAT1-RELATED PROTEIN 203 323 - -
Lsi08g00420 350 PANTHER WAT1-RELATED PROTEIN 29 202 - -
Lsi08g00420 350 PANTHER WAT1-RELATED PROTEIN 29 202 IPR030184 GO:0016021|GO:0022857
Lsi08g00420 350 PANTHER WAT1-RELATED PROTEIN 203 323 IPR030184 GO:0016021|GO:0022857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00420 Lsi-Chr8:11705883 Lsi08g00422 Lsi-Chr8:11736209 3.80E-64 proximal
Lsi08g00420 Lsi-Chr8:11705883 Lsi08g00421 Lsi-Chr8:11732116 7.21E-49 tandem
Lsi04g02384 Lsi-Chr4:30985937 Lsi08g00420 Lsi-Chr8:11705883 2.24E-95 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00420 - - csv:101217521 572.778