Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00423 ATGGTGATGTGGGTATTCGGGTACGGTTCTCTTATTTGGAAAACTGGCTTCCCTTATGATGAAAAATTACCTGGCTGTATCAAAGGCTACCGCCGTGTCTTCTATCAAGGAAGTACGGATCATAGAGGAACTTCTGAGTTTCCTGGAAGAACTGTCACATTGGAGACTGCCGAAGGAGAAGTTTGTTCTATTTGGAGGATAATGAGCTTTAGAGTTTATGGAAGCCATTGTAAATATTGTAGGTATATTGCATCTCCAGACAAGAAGCTAAACAAGAATTACCTTGGCCCTGCATCCATTGAGGAGATTGCTAAGTATGTATTTGACATTGATGTGATTTTTATACCCCTTGGCATTTATTGA 363 40.22 MVMWVFGYGSLIWKTGFPYDEKLPGCIKGYRRVFYQGSTDHRGTSEFPGRTVTLETAEGEVCSIWRIMSFRVYGSHCKYCRYIASPDKKLNKNYLGPASIEEIAKYVFDIDVIFIPLGIY 120
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11754962 11758496 + Lsi08G004230.1 Lsi08g00423 668349

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00423 120 PANTHER CATION TRANSPORT PROTEIN CHAC-RELATED 2 62 IPR006840 GO:0003839|GO:0006751
Lsi08g00423 120 Pfam ChaC-like protein 3 76 IPR006840 GO:0003839|GO:0006751
Lsi08g00423 120 CDD GGCT_like 5 64 IPR013024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00423 K22596 GGCT; gamma-glutamylcyclotransferase, plant [EC:4.3.2.9] - csv:101217290 159.458
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00423 Lsi-Chr8:11754962 Lsi08g01114 Lsi-Chr8:19773926 2.94E-22 dispersed
Lsi08g00423 Lsi-Chr8:11754962 Lsi04g02210 Lsi-Chr4:29138750 1.03E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g283 . . . . . . . . Cmo04g02465 . . . . . . . . Bhi04g01928 Tan11g1292 . . Hepe02g2283 . . Cla08g00579 Cam08g0994 Cec08g0583 Cco08g0693 Clacu08g0703 . Cre08g0514 Cone4ag1396 Cone7ag1541 . . . . . Cme03g00573 . . . Bda13g01484 . Bpe14g00379 . Bma02g00221 . . . . . Car04g02282 . Cpe01g02044 . . . . . . . . . . . . . . . Lsi08g00423 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008545 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00423 Lsi_Chr08 FPKM 0.0 0.0 1.016111 1.291081 9.062555 8.745164 7.679726 0.233443 0.101879 0.107338