Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00427 ATGAAAGGCAGCCATGGCGCTCTGGAGGTGGCCAAGACGGTCATGGAGGTTGCAGACATGGCCTGGTCGGCGATTGAGTGTTGCCATCACCATAAACCCAGCGTCGATGCCACCGAGCGCACTCCTACAGAGGAAGAAGAACTCAATGCTCTGCGATCGGAGAATCGGAGATTGAGGAATTTGCTTGAACAAAATCTCGACCTCCTTCAGAAGCTATCCGAATCTCACTGTTTGCTCAAGGATTGCCCTCCCGATCTGTACGCTCGTCTCGTTGCGACAGTGGATTCTGAAAAGTTCTTAAATGAAATTAAATCCCTCAACGAAGCATCAAAAGATGGAATTAGCTATGAATTTCCTTTCAGGGAAGCTACAGGAGCTGATTCGCACACAGCTGACATTCTTGTGAATGTTAGCCGTGAAGCACCCAGTTGGTGGATATGGGTTACTGAAGATATGGTTCCGAGCACAGTTGAGGAATGGAGTGGAATTGATGATGATAGTTATGTGATTGTATCTGAAGAACATGTGGTGGATGCAGTTGCCCACTTTATGGCTAGATGTATTATGTCAAACCCGAAAACCCGGAATGTATCACCTGAGGAGCTGCAGAAAACAATAGCAAAGGCGCTGAATGGTATGGGCGGCAAAGTTGAGAAGATGTTTGAAATTTGGCATGCTGGGCTGCTGTTTTATTCCTTAGCCACTTGGGGACTTGCACTGGCAGGCTTGTACAAGGGTCGGGCTATACTGAAATTGGCTGCCACTGGTGTTCACCATACAAGCAAAGCAGTGATGAAGGTGCTCTGA 807 47.58 MKGSHGALEVAKTVMEVADMAWSAIECCHHHKPSVDATERTPTEEEELNALRSENRRLRNLLEQNLDLLQKLSESHCLLKDCPPDLYARLVATVDSEKFLNEIKSLNEASKDGISYEFPFREATGADSHTADILVNVSREAPSWWIWVTEDMVPSTVEEWSGIDDDSYVIVSEEHVVDAVAHFMARCIMSNPKTRNVSPEELQKTIAKALNGMGGKVEKMFEIWHAGLLFYSLATWGLALAGLYKGRAILKLAATGVHHTSKAVMKVL 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11788790 11791532 + Lsi08G004270.1 Lsi08g00427 668353

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00427 268 PANTHER RING FINGER PROTEIN 4 268 - -
Lsi08g00427 268 Coils Coil 44 75 - -
Lsi08g00427 268 PANTHER EXPRESSED PROTEIN 4 268 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00427 - - - cmos:111459551 465.692
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00427 Lsi-Chr8:11788790 Lsi08g01036 Lsi-Chr8:18956379 9.59E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g281 . . . . . . . . Cmo04g02466 Cmo15g00701 . . . . Sed03g0792 . . Bhi04g01924 Tan11g1288 Cmetu03g2241 . Hepe02g2281 . Lcy10g1219 Cla08g00581 Cam08g0996 Cec08g0585 Cco08g0695 Clacu08g0705 . Cre08g0516 Cone4ag1397 . Cone17ag1277 Cone20ag0449 . . . . Blo17g00179 . . Bda13g01483 . Bpe14g00381 . Bma02g00219 . . . . . Car04g02283 Car15g00632 Cpe01g02045 . . . . . . . . . . . . . . . Lsi08g00427 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005536 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 2 1 1 1 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00427 Lsi_Chr08 FPKM 11.021686 12.294322 15.693671 17.655739 18.313042 16.648239 17.805141 27.958752 29.480766 28.930483