Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00428 ATGGCTTCTGCTCCTTCGAAGCTCTATGCAGATGATGTTAGCCTTTTAGTGGTTTTACTGGATACGAATCCATTTTTCTGGAGCACATCTTCTCTCCCATTCTCCAAGTTTCTGTCTCATGTACTTGCTTTTCTGAACTCCATTTTAGTTCTGAATCAACTTAATGAGGTTGTGGTTATTGGTACTGGATACGCTTCATGCAAGTATTTATACAACTCATCTTCTTACTCAAATCATGGCCTTGAAGATGGTAGAATGCCTGCACTTTGTACTCGTTTATTGAAGAATTTGGAGGAATTCGTGATTGGGGATGAACAGTCCATCAAGGAAGACCCCAAAGGAGGGACCATGTCCTCACTTCTTTCTGGATCGCTCTCCATGGCTTTGTGTTATATACAGAAAGTTTTCCGCTCTGGATCTCTCCATCCCCAACCTCGAATCCTTTGCTTGCAGGGATCCCCAGATGGACCTGAACAATATGTTGCAATCATGAATGCCATCTTTTCTGCTCAGCGTTCAATGGTTCCTATAGATTCATGTTATATTGGTTCGCACAATTCTGCATTTCTTCAGCAGGCTTCTTACATAACGAGTGGAGTTTATCTGAAGCCTCAGCAAATGGATGGGCTGTTTCAATATCTCTCTACTGTTTTTGCCACTGATTTGCATTCTCGGACCTTCTTACAGCTTCCAAAATCTGTTGGTGTGGATTTTCGTGCATCGTCGGTTTTTGGTGAGACGCCAGTAGAAGTCGATTCAGTGTCTAAACAGAAGAGAAAAACTCCAGAATGA 792 42.3 MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITSGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRASSVFGETPVEVDSVSKQKRKTPE 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11792607 11797227 - Lsi08G004280.1 Lsi08g00428 668354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00428 263 Gene3D von Willebrand factor, type A domain 10 221 IPR036465 -
Lsi08g00428 263 PANTHER TRANSCRIPTION INITIATION FACTOR IIH TFIIH , POLYPEPTIDE 3-RELATED 1 251 IPR004600 GO:0000439|GO:0006289|GO:0006355
Lsi08g00428 263 Pfam Transcription factor Tfb4 13 251 IPR004600 GO:0000439|GO:0006289|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00428 K03143 TFIIH3, GTF2H3, TFB4; transcription initiation factor TFIIH subunit 3 - csv:101212755 483.411
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g280 . . . . . . . . . Cmo15g00700 . . . . . . . Bhi04g01923 Tan11g1287 . . Hepe02g2280 . . Cla08g00582 Cam08g0997 Cec08g0586 Cco08g0696 Clacu08g0706 . Cre08g0517 . . Cone17ag1278 Cone20ag0448 . . . . Blo17g00178 . . Bda13g01482 . Bpe14g00382 . Bma02g00218 . . . . . . Car15g00631 . . . . . . . . . . . . . . . . Lsi08g00428 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005130 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 2 1 0 2 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00428 Lsi_Chr08 FPKM 3.88291 3.930423 2.999861 2.82608 4.532685 4.24536 5.069668 6.998795 7.053331 6.6997