Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00430 ATGGCAGATCAAGTGATGTCTAGTGCTTGCAGAGCTCTGAATTTGTTTTTGTTTGTTGTTTTAACATCTATTTTGGCCAATGTAGCTTTTGTTTGCGCTAAATCAACTATAGAGCCATGTTCGAACTCCGATTCTTGCAATGCCCTGCTCGGTTACACTCTTTACACCGACCTCAAGGTTTCTGAAGTTGCTTCGCTCTTTCAAGTCGACCCCATTTCGATTCTCACCGCCAACGCCATAGATGTTTCATACCCAGATGTTGAAAATCACATTCTCCCTTCGCAGCTCTTCATCAAAATCCCCATTTCTTGTTCTTGCGTTGATGGGATTCGTAAATCGGTTTCGACTCGGTACAAGACTCGCCCATCTGACACTCTCTCGTCGATTGCCGATTCCATCTACGCTGGTTTGGTCTCTTCAGATCAGATTCGGGAGGCTAATTCCATTTCGGACCCCTCTCTTCTCGATGTAGGACAGACCCTTGTTGTGCCGCTTCCTTGTACTTGCTTTAATGGAACTGACAATTCGTTGCCTGCTATTTACTTGTCTTACGTTGTTCAACCTGAAGATACTTTAACTGGGATTGCTTTTAGATATTCGACTACTATCACTGATTTGATGGATGTTAATGCCATGGGCAACCCAGCGATTAAGGCTGGTGATATTTTGGCCGTCCCCTTGCCAGCTTGTGCGTCTAAATTTCCTACGTATGCCTCCGACTCTGGCTTGATCGTGCCCAATGGGAGCTATGCCATTACAGCGAGTCATTGTGTGCAATGTAGCTGTGGACCAGGGAACCTCAATATGTATTGCATGCCTGCTCCCTTCGCTGTTTCTTGTTCGAGTATGCAATGCAAAAACAGCAATCTAATGCTTGGGAATGTCACTGCACAGCAGAGTAGTGCAGGTTGCAATGTTACATCTTGTAGTTATGGTGGTTTTGTAAATGGCACCATAGTGACGACGTTGTCTTCGAATCTTCAGCCTCGATGCCCAGGGCCACAGCAATTTCCCCCACTTAAAGCCCCACCTACTATAGTAATCAGAGATACAAATTTTGCACCTGCACCTGCTCCTCAATTTGATGGCTCTGGATCACCTGCACCCGGATTGGGATTGATCCCTTCAACAACTGGTTCTCTCCCTGGACTCCCGCCAGCCAGTGGCCCCAGTGGTAGTACTTCTGGGATGAACTCCGCGCCTTCCGCTGCTTCCTCATTGGTGAATCCATTAGCTAGTATCCCTGCTGCCTTTCTGTTATTTATCCTCGTCAACTTCTTAACGTCATTTTCATTGTAA 1299 46.34 MADQVMSSACRALNLFLFVVLTSILANVAFVCAKSTIEPCSNSDSCNALLGYTLYTDLKVSEVASLFQVDPISILTANAIDVSYPDVENHILPSQLFIKIPISCSCVDGIRKSVSTRYKTRPSDTLSSIADSIYAGLVSSDQIREANSISDPSLLDVGQTLVVPLPCTCFNGTDNSLPAIYLSYVVQPEDTLTGIAFRYSTTITDLMDVNAMGNPAIKAGDILAVPLPACASKFPTYASDSGLIVPNGSYAITASHCVQCSCGPGNLNMYCMPAPFAVSCSSMQCKNSNLMLGNVTAQQSSAGCNVTSCSYGGFVNGTIVTTLSSNLQPRCPGPQQFPPLKAPPTIVIRDTNFAPAPAPQFDGSGSPAPGLGLIPSTTGSLPGLPPASGPSGSTSGMNSAPSAASSLVNPLASIPAAFLLFILVNFLTSFSL 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11809016 11811897 - Lsi08G004300.1 Lsi08g00430 668356

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00430 432 SMART LysM_2 117 164 IPR018392 -
Lsi08g00430 432 SMART LysM_2 183 226 IPR018392 -
Lsi08g00430 432 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 3 16 424 - -
Lsi08g00430 432 Gene3D LysM domain 112 173 IPR036779 -
Lsi08g00430 432 SUPERFAMILY LysM domain 182 227 IPR036779 -
Lsi08g00430 432 ProSiteProfiles LysM domain profile. 182 225 IPR018392 -
Lsi08g00430 432 SUPERFAMILY LysM domain 116 165 IPR036779 -
Lsi08g00430 432 MobiDBLite consensus disorder prediction 381 400 - -
Lsi08g00430 432 Pfam LysM domain 184 226 IPR018392 -
Lsi08g00430 432 Pfam LysM domain 118 164 IPR018392 -
Lsi08g00430 432 CDD LysM 116 163 IPR018392 -
Lsi08g00430 432 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 16 424 - -
Lsi08g00430 432 CDD LysM 183 225 IPR018392 -
Lsi08g00430 432 Gene3D LysM domain 174 233 IPR036779 -
Lsi08g00430 432 ProSiteProfiles LysM domain profile. 116 163 IPR018392 -
Lsi08g00430 432 MobiDBLite consensus disorder prediction 358 400 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00430 - - - csv:101216338 800.431
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00430 Lsi-Chr8:11809016 Lsi11g01276 Lsi-Chr11:21358770 8.93E-35 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g278 . . . . . . . . Cmo04g02467 Cmo15g00697 . . . . Sed03g0791 . . Bhi04g01920 Tan11g1285 Cmetu03g0754 . Hepe02g2277 . Lcy10g1221 Cla08g00584 Cam08g0999 Cec08g0588 Cco08g0698 Clacu08g0708 . Cre08g0519 Cone4ag1398 Cone7ag1539 . . . . . Cme03g00571 . Blo18g00186 . Bda01g01423 Bpe02g01637 . Bma01g00824 . . . . . . Car04g02284 Car15g00629 Cpe01g02046 . . . . . . . . . . . . . . . Lsi08g00430 . Chy03g00813 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi11g01276 . 24 289 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 50.4 1.3e-72 270.4
Lsi08g00430 . 15 385 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 73.5 1.9e-155 545.8
Lsi08g00430 . 15 356 LysM Receptor-like Protein (LYPs) Gene Family AT1G77630 68.7 2.2e-135 479.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007180 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00430 Lsi_Chr08 FPKM 5.59375 5.02238 0.766077 0.827387 1.046315 1.231844 1.598035 0.680696 0.836353 1.4874