Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00431 ATGCCAAGTACGGAATCGTTTCTGAGGCAGATAAGTAGAAGAGGGGAGGGTTCTAGATCAACTTCGAGAAGGTGGGGTGGGGAGTTCAGGAGAAGCGAAGCTGAGGAGCGTGTCAGTGAGGGGAGCCATTGGAATCAGAAGATGGAGGGTGGTGTTAACAACATGTATGGGATCGACAATGGCGGGGTGTCAAGAAGGAAGAGGGTGATGGTGGTGGTGGATCAGACTTCTCAATCTAACCATGCAACTATGTGGGCTCTCACTCATGTGGCTAACAAGGGCGATGTTCTCACTCTTCTACATGTCATTAACAGCTCCTCTACAGACTCTTCTTCTTCTGCTGCAGATTCTTCTTCTTCTTCCTCTTTCTGTGCTAGCTCTCTTGGTTCTCTCTGCAAGGCTTCTAGACCTGAGGTAGAGGTGGAAGTGCTGGTAGTAGAGGGACCGAAGCTGGCCACAGTGATAAACCAAGTTAAGAAGCTGGAGGTGTCGGTGCTGGTTGTGGGACAGAGAAGGCCATCCTTTCTCAGCTGCTTTTGTGGGAGTGGTGGGGCGGGAGATTTGGTGGAACAGTGCATAAACAACGCAGAGTGCTTGACCATTGGAGTTAGAAAGCAGAGCAGGGACATGGGTGGACCTGGGCCTCACTACATCTGTTCCTATTCAGAACTAAGCCTCACTATCATCCACCCATTACAGTTGAGCAGAACTGGGCAACGCCAGAATCCTTATTGGATCCACATGTATCAGGCTAAAGAAGCTAGCTTACTCGCACCTCGACTAATCTCACAGGACAACCTACCTGACCCTATAATATTTGGGTGTCAAGGAAACTCAGATCCAAACTTCTGTTACTTCCATCCTAAAGAAATAGTGGTGGGCGTCTGCGCTTTGTGCTTAAACGAGCGGCTTCTTATTTTGGCGTCCAGACGAGGCCGCCACCACTCTTCAGCCCGAAGCTGCCGGAAAACTCCCATCAACCTCTCCAAGATCTTTGCTTTTAGCTCTTTCATTAGCCGTCTCGAATTCCGGCATTCGAAGCCGGAAAACTCCGACGATGAAGCTTCCACCAGTCAAGAAGACTCGTTCATCTCAATCAACTTTGGGAAAAATGGAGTTGGGTCATGGGAGGAGAACAAGGTATCAGAGGTGTCCCTGGAAAACTGCAGCCTGTCATGGAATCATCACTTGAGCAAAGACTCCAAGGAGACCAAGACTGTGATAGAACACAGCAAGACCCGTGCCTCACTTAGGTGGCGGAAGCGGATTGGCCACCTCTTCCAGCTCATCAGAAGGAAAAGGTCCAACAAAGGGACAGTCTGCCACGTGGAAGGAGTTAAGACAAGGAAAGGCTGGATAAGAACTCTGACAAGGTCAAGAAATACTGAATAG 1392 49.43 MPSTESFLRQISRRGEGSRSTSRRWGGEFRRSEAEERVSEGSHWNQKMEGGVNNMYGIDNGGVSRRKRVMVVVDQTSQSNHATMWALTHVANKGDVLTLLHVINSSSTDSSSSAADSSSSSSFCASSLGSLCKASRPEVEVEVLVVEGPKLATVINQVKKLEVSVLVVGQRRPSFLSCFCGSGGAGDLVEQCINNAECLTIGVRKQSRDMGGPGPHYICSYSELSLTIIHPLQLSRTGQRQNPYWIHMYQAKEASLLAPRLISQDNLPDPIIFGCQGNSDPNFCYFHPKEIVVGVCALCLNERLLILASRRGRHHSSARSCRKTPINLSKIFAFSSFISRLEFRHSKPENSDDEASTSQEDSFISINFGKNGVGSWEENKVSEVSLENCSLSWNHHLSKDSKETKTVIEHSKTRASLRWRKRIGHLFQLIRRKRSNKGTVCHVEGVKTRKGWIRTLTRSRNTE 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11826534 11833930 + Lsi08G004310.1 Lsi08g00431 668357

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00431 463 MobiDBLite consensus disorder prediction 16 43 - -
Lsi08g00431 463 MobiDBLite consensus disorder prediction 1 15 - -
Lsi08g00431 463 PANTHER - 1 212 - -
Lsi08g00431 463 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 1 212 - -
Lsi08g00431 463 MobiDBLite consensus disorder prediction 1 53 - -
Lsi08g00431 463 Pfam Universal stress protein family 66 200 IPR006016 -
Lsi08g00431 463 Pfam Protein of unknown function (DUF740) 280 333 IPR008004 -
Lsi08g00431 463 CDD USP_Like 68 198 - -
Lsi08g00431 463 Gene3D HUPs 65 211 IPR014729 -
Lsi08g00431 463 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 67 198 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00431 - - - csv:101207127 352.058
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g02387 Lsi08g00431 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02387 Lsi-Chr4:31012805 Lsi08g00431 Lsi-Chr8:11826534 6.64E-43 dispersed
Lsi08g00431 Lsi-Chr8:11826534 Lsi02g00161 Lsi-Chr2:1329288 2.28E-10 dispersed
Lsi04g02386 Lsi-Chr4:31011933 Lsi08g00431 Lsi-Chr8:11826534 9.93E-17 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g275 . Blo12g00670 . . Bpe02g00071 Bpe04g00489 . Bma01g02647 Cmo04g02468 . . Cma09g00679 . . Sed05g2350 Cpe06g00528 . Bhi04g01919 Tan11g1284 Cmetu03g0412 . Hepe02g2276 . Lcy10g1222 Cla08g00585 Cam08g1000 Cec08g0589 Cco08g0699 Clacu08g0709 . Cre08g0520 Cone4ag1402 Cone7ag1537 Cone17ag1279 Cone20ag0447 Lsi04g02387 Csa04g01805 . Cme03g00567 . . Bda11g00741 Bda01g01424 Bpe02g01638 . Bma01g00822 . . . Cmo09g00659 . . Car04g02285 Car09g00598 . . Bhi09g02669 . . . Hepe01g2279 Mch11g0827 . Cla11g01533 Cam11g1592 Cec11g1621 Cco11g1622 Clacu11g1751 Cmu11g1567 Cre11g1983 Lsi08g00431 . Chy07g00648 Cme07g00857
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004342 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 0 1 1 1 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00431 Lsi_Chr08 FPKM 25.797852 28.638512 13.745574 13.262966 10.89711 10.626866 12.307055 15.527167 14.348242 17.112673