Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00436 CATGGAAGGCCAGCTGAGATCGCGGAATACAACCGCCTCTTATCGCAAAAATCCCCAAAATCAAATCTCTCACCAAATTTCTCATTTCTTCTTCTCTCCCTCTCTCTCTTTCAACTTCACAGTTCAAACGCGATGACCGTCGTAGCAACGGCCGCCGCTCTCTCCTTGCCGTTCTCTTTTTCCAAATCTCCGAAGCTCAATTTTAAGAAGAGTGTGAAAGGAGGATTTAGAGTGTTTGCTGTGTTTGGAGAGGAAGGAGCTATAGAGAGGAAGAGTGGTTGGGAAACGCTATTTGATGTGGAAGATCCGAGGACAAAGGTTCCTCAATGTAAAGGGAAGTTCTTAGATGTTAATCAAGCTCTGGAAGTGGCTAGATTTGACATTCAATATTGTGATTGGCGAGCTCGGCAAGATGTTCTTGCAATCATGCTTCTCCATGAAAAGGTTCCTCCAATCTCATGCTACTTTGTTGTGGAAGTCCTAAATCCTCTAGCCCGTGACTATAAATCTATCGGAACAATGAAGAAGGAGCTTGCCGGACTACAGGACGATTTAGCAGAAGCTCATAGACAGGTTCATATATCTGAGGCACGGGTTGCCACTGCTTTAGATAAACTAGCTTACATGGAAGAATTGGTGCACGATAGGCTGTTACAAGACAGAAACACAGTGGAATTGGATAGCCCATCTACCTCGACTGGTACTTCAACACAATCTCATGATTCTGTAAATAGAAGATCGACGAAGAAAAGCTTGAATGTTTCAGGACCTGTCGAACCGTATCATCCCCGCTTGAAGAACTTCTGGTATCCTGTTGCTTTCTCCAGTGATCTGAAAGATGACATAATGATCCCATTTGATTGTTTTGAAGAACCATGGGTTCTTTTCCGAGGAAAGGATGGCAATCCTGGTTGCATACGGAACACATGTGCTCATAGGGCGTGCCCTCTTCACCTCGGTTCTGTCAATGACGGTCGAGTCCAGTGTCCATACCATGGTTGGGAATACTCAACAGATGGCAAATGTGAGAAAATGCCATCAACGCGACTGCTAAATGTGAAAATAAAATCTCTGCCATGTTTTGAGAAAGAAGGAATGATCTGGGTTTGGCCAGGTAATGATCCTCCAGCAGCTAATCTTCCATCTCTAAATCCTCCTCCTGGTTTTCAAATCCATGCTGAGCTCGTTATTGAAATTCCTGTGGAGCATGGATTACTACTAGATAACCTTCTGGATCTTGCTCATGCACCTTTTACTCATACTTCCACTTTTGCAAAAGGATGGAGCGTACCCAGGTACATTTCAATCGATGTCATAGCTATGCAAAATATCGTTTGCGGTCATGTCGGAACAAAAGCCAAAGAAAAAAGTGCTCACTTTCTTTACTTTTTGTGGAATGCAGCATATATTTGTATCTTGAGTTATCAGTTAAAAAACTTGGTGAAATTTTTAACCCCTGCATCTGGGCTCCAAGGATACTGGGACCCTTACCCAATTGACATGGAATTTCGACCACCTTGTATGGTGTTATCAACAATAGGGATCTCCAAGCCAGGAAAACTAGAAGGCCAAAGTACCAGAGAATGCTCAACACATCTTCATCAACTTCATGTGTGCTTACCTTCAACAAGACAGAAGACAAGACTACTGTATAGAATGTCACTGGATTTTGCTCCTGTGTTGAAGCAGATTCCCTTCATGCACTATCTCTGGAGATACTTTGCAGAACAGGTATTGAATGAGGACTTAAGGCTCGTCATTGGTCAGCAAGAAAGAATGCTTAACGGAGCAAACATTTGGAATATGCCAGTTTCTTATGATAAGCTAGGTGTAAGATATAGGCTATGGAGAAATGCAGTAGAAGAAGGAGCAAAACAACTACCCTTCAGCGAATCAACTTGA 1902 42.9 HGRPAEIAEYNRLLSQKSPKSNLSPNFSFLLLSLSLFQLHSSNAMTVVATAAALSLPFSFSKSPKLNFKKSVKGGFRVFAVFGEEGAIERKSGWETLFDVEDPRTKVPQCKGKFLDVNQALEVARFDIQYCDWRARQDVLAIMLLHEKVPPISCYFVVEVLNPLARDYKSIGTMKKELAGLQDDLAEAHRQVHISEARVATALDKLAYMEELVHDRLLQDRNTVELDSPSTSTGTSTQSHDSVNRRSTKKSLNVSGPVEPYHPRLKNFWYPVAFSSDLKDDIMIPFDCFEEPWVLFRGKDGNPGCIRNTCAHRACPLHLGSVNDGRVQCPYHGWEYSTDGKCEKMPSTRLLNVKIKSLPCFEKEGMIWVWPGNDPPAANLPSLNPPPGFQIHAELVIEIPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPRYISIDVIAMQNIVCGHVGTKAKEKSAHFLYFLWNAAYICILSYQLKNLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGQSTRECSTHLHQLHVCLPSTRQKTRLLYRMSLDFAPVLKQIPFMHYLWRYFAEQVLNEDLRLVIGQQERMLNGANIWNMPVSYDKLGVRYRLWRNAVEEGAKQLPFSEST 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11893341 11897442 + Lsi08G004360.1 Lsi08g00436 668362

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00436 633 MobiDBLite consensus disorder prediction 223 255 - -
Lsi08g00436 633 Gene3D - 387 466 - -
Lsi08g00436 633 Gene3D - 475 627 - -
Lsi08g00436 633 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 130 434 - -
Lsi08g00436 633 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 477 630 - -
Lsi08g00436 633 SUPERFAMILY ISP domain 264 372 IPR036922 GO:0051537
Lsi08g00436 633 ProSitePatterns Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 310 332 IPR015881 GO:0005506|GO:0051537
Lsi08g00436 633 PANTHER CHLOROPHYLLIDE A OXYGENASE, CHLOROPLASTIC-LIKE 477 630 - -
Lsi08g00436 633 Coils Coil 171 198 - -
Lsi08g00436 633 Pfam Vanillate O-demethylase oxygenase C-terminal domain 402 426 IPR044043 GO:0016491
Lsi08g00436 633 MobiDBLite consensus disorder prediction 223 254 - -
Lsi08g00436 633 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 269 369 IPR017941 GO:0051537
Lsi08g00436 633 PANTHER CHLOROPHYLLIDE A OXYGENASE, CHLOROPLASTIC-LIKE 130 434 - -
Lsi08g00436 633 SUPERFAMILY Bet v1-like 365 620 - -
Lsi08g00436 633 Pfam Pheophorbide a oxygenase 503 597 IPR013626 GO:0010277
Lsi08g00436 633 Pfam Rieske [2Fe-2S] domain 269 350 IPR017941 GO:0051537
Lsi08g00436 633 CDD Rieske_RO_Alpha_Cao 252 380 - -
Lsi08g00436 633 Gene3D - 263 385 IPR036922 GO:0051537
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00436 K13600 CAO; chlorophyllide a oxygenase [EC:1.14.13.122] - csv:101205768 1027.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00407 Lsi-Chr6:4506051 Lsi08g00436 Lsi-Chr8:11893341 8.49E-09 dispersed
Lsi06g00408 Lsi-Chr6:4508057 Lsi08g00436 Lsi-Chr8:11893341 4.57E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g260 Blo01g01296 Blo12g01127 Bda01g00654 Bda03g00012 Bpe02g00642 Bpe04g00006 Bma04g00011 Bma01g02071 Cmo04g02472 Cmo15g00690 . . . . . . . Bhi04g01914 . . . Hepe02g2268 . . Cla08g00590 Cam08g1005 Cec08g0595 Cco08g0704 Clacu08g0714 . Cre08g0525 Cone4ag1410 Cone7ag1528 . . . . . Cme03g00556 . . . . . . . . . . . . . Car04g02290 Car15g00623 Cpe01g02051 . . . . . . . . . . . . . . . Lsi08g00436 . Chy03g00799 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005024 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00436 Lsi_Chr08 FPKM 0.0 0.0 0.0 0.0 0.238429 0.241952 0.0 0.0 0.0 0.0