Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00438 ATGGTAGATTCTAGGGTAGATACAATTTCAAGGTTAGCGCAATGGAGAATCGACAGCCTCGGCCCTTGCAACTTCAAGAAATCCGATCCTTTCAAGATAATCTTAGTCTGTTCTTCAATTTATGTACTGGATTTGAGGCATTTATCGGTCGAGAAGAGTCGATATCTGCACGTTCGTTTGTTCCCTGAGCCGTCGAAGATCGCCAAGGAGCAGCCTCCAATTGCTCGGTTTTTTATTCGAGTCTCTAGCGTTGGACCCAACCGTAGACCTTCTGTTTCTCCCATTCATGAAAAACTTCTTCGGACAAGTGAAGACTTTGTTTGGGCCGTTGATTCCACCTTCCATGGTCGGTTCATTGTTGATGTCGAATTTCTTGACTTGAAGATCTGCCCTATGAATGGAGGAGAAGCGAGTTCTATATGGCCCATGGAGGGAATGATGCAATCAGTATCATCTCAAAGCACTCTTCAATGCCTCTCTCGCATGCTAGACGAGGCTATCCATGCCGATGTCACCATAAAGACGATCGATGGCACCTTACAAGCTCATAAAGCCATTTTATCGGCCAGTTCTCCGGTGTTCAAGAGCATGTTCCATCACAATCTCAAGGAAAAAGAGTCTTCCATCATCTTCATAGAAGACATGACTCTAGATGCCTGCATGGCTCTGTTACGTTACTTGTATGGAACCATAACTGAAGAAAACTTCTGGAAGCATCGACTGTCGCTTCTCGGGGCAGCAAACAAGTATGGTATTGTAGACCTAAAAGATGCTTGCGAGGAGAGCCTTTTGGAAGACATAAACTCGGGGAATGTCCTTGGGAGACTGCAAGAAGCATGGCTTTATCAGCTGCATAAACTGAAAAAAGGATGCTTGGCATACTTATTTGATTTCGGTAAGGTTTACGACATTAGAGACGAAATAAATGACTTCTTCATGCAAGCGGATCGGGAATTGATGATGGAGATGTTCCAAGAAGTGCTTACAGTATGGAAACCAGTTTAA 1005 44.08 MVDSRVDTISRLAQWRIDSLGPCNFKKSDPFKIILVCSSIYVLDLRHLSVEKSRYLHVRLFPEPSKIAKEQPPIARFFIRVSSVGPNRRPSVSPIHEKLLRTSEDFVWAVDSTFHGRFIVDVEFLDLKICPMNGGEASSIWPMEGMMQSVSSQSTLQCLSRMLDEAIHADVTIKTIDGTLQAHKAILSASSPVFKSMFHHNLKEKESSIIFIEDMTLDACMALLRYLYGTITEENFWKHRLSLLGAANKYGIVDLKDACEESLLEDINSGNVLGRLQEAWLYQLHKLKKGCLAYLFDFGKVYDIRDEINDFFMQADRELMMEMFQEVLTVWKPV 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11924756 11927292 - Lsi08G004380.1 Lsi08g00438 668364

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00438 334 PANTHER OS08G0103600 PROTEIN 1 334 - -
Lsi08g00438 334 ProSiteProfiles BTB domain profile. 169 228 IPR000210 GO:0005515
Lsi08g00438 334 SUPERFAMILY POZ domain 150 265 IPR011333 -
Lsi08g00438 334 CDD BTB_POZ_ZBTB_KLHL-like 168 250 - -
Lsi08g00438 334 Pfam BTB/POZ domain 162 265 IPR000210 GO:0005515
Lsi08g00438 334 SMART BTB_4 169 267 IPR000210 GO:0005515
Lsi08g00438 334 PANTHER OS08G0495500 PROTEIN-RELATED 1 334 IPR044714 -
Lsi08g00438 334 Gene3D Potassium Channel Kv1.1; Chain A 143 296 IPR011333 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00438 K10523 SPOP; speckle-type POZ protein - csv:101205535 610.142
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01794 Lsi-Chr2:23747444 Lsi08g00438 Lsi-Chr8:11924756 1.02E-118 dispersed
Lsi03g00279 Lsi-Chr3:3404810 Lsi08g00438 Lsi-Chr8:11924756 7.21E-11 dispersed
Lsi08g00438 Lsi-Chr8:11924756 Lsi09g01366 Lsi-Chr9:21700801 3.91E-11 dispersed
Lsi08g00438 Lsi-Chr8:11924756 Lsi05g01464 Lsi-Chr5:22494107 5.56E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g259 . . . . . . . . Cmo04g02476 . Cma01g01052 . Car01g00927 . . . . Bhi04g01910 Tan11g1271 . . Hepe02g2263 . . Cla08g00595 . Cec08g0599 Cco08g0709 Clacu08g0719 . Cre08g0529 Cone4ag1411 Cone7ag1527 . . . . . Cme03g00549 . Blo18g00183 . . Bpe02g01644 . Bma01g00813 . Sed07g2802 Cmo01g01092 . . . Car04g02293 . Cpe01g02054 Cpe02g00843 Bhi09g01832 Tan01g3241 Cmetu01g1881 . . Mch11g1322 . . . . . . . . Lsi08g00438 . Chy03g00794 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007181 1 4 0 3 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25730 PF00651 BTB 5.70E-22 CL0033 Lsi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00438 Lsi_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0