Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00440 ATGATCTCCGTTGCGAATTTTTTCTCAATTTTCTTCATCGTCATTCACGCCTTCTCACTCTCCTCATCCTCTCCGGTCGGCGGTGATCACGGCGGCTCTTCTCTAATAGGCGCCGGCTGTGGCTTACAACCGCTGCGGATTTCTAATTCTCTCAAGAATCAGAGTATTGGACCGTTGATGTCTCGATTGGAATCTCAGAATTGCGAGGTTTGGACGGAGGCCTGCTCTGAGGCGATCCTGAGTTTGGCGAAGCGGCCTGAGGTTGTTGATTGGTTGAAGAAGGTGAGGAGAAGAATCCATGAGAATCCGGAGCTTGCGTTCGAAGAATTCGAAACTAGTCAGTTAGTTCGCGATGAGTTGGATCGGATGGATATTAGCTACGAGCATCCGTTGGCTAAAACTGGCGTTCGTGCTAGGATCGGAACTGGCGGACCGCCTTTTGTTGCTCTTAGAGCCGATATGGATGCTCTTCCAATCCAGGAAGCTGTGGAATGGGAGCATAAAAGCAGAGTCCCAGGCAAGATGCATGCTTGTGGGCACGATGCTCACGTTACAATGCTTCTTGGTGCTGCCAAGATTTTGAAGGAACGTGAAAATCTCTTGAAGGGAACGGTGATTCTGCTGTTTCAGCCAGCTGAGGAGGCTGGCAATGGCGCAAAGAGAATGATTGGAGATGGGGCTTTAAAAGATGTTCAAGCCATTTTTGCAGTTCATGTTTCTCATGAACATCCCACCTCCGTTATCGGGTCCCGCCCCGGTCCTCTGCTCGCCGGCTGTGGCTTCTTTAGGGCCGTGATTACTGGCAAGAAGGGTCGTGCTGGTTCGCCACACCGGTCCGTCGATCCGGTTGTGGCTGCCTCCGCCGCCGTTGTCAGCTTGCAGGGGATTGTGTCTCGTGAAGCAAATCCTTTAGATTCGCAGGTTGTGTCAGTGACTTCGTTCAATGGAGGAAATAATCTGGATATGATTCCAGACACCGTCGTTATTGGAGGGACCTTCAGGGCTTTCTCCAACTCAAGTTTCTACCAAGTGCTTCAAAGAATAGAGCAGGTAATAGTGGAGCAGGCCAGTGTCTACAGATGCTCAGCAATGGTGGATTTCTTTGAAAAAGAATACACCATATACCCACCAACTGTAAATGACGAAAAAATGTATGAACATGTGAAGAAAGTGGCAATTGATCTTCATGGTTCACAAAATTTCAGGCTTGTCCAACCAATGATGGGAGCCGAGGACTTTTCCTTCTACTCAGAGTTTGTTCCTGCAGCCTTCTATTACATAGGAGTCAGGAACGAAACTTTAGGCTCGATCCACACAGGCCACTCTCCCTACTTCATGATCGACGAAAACGTCCTCCCGATTGGCGCTGCAACTCACGCAACCATTGCTGAGAGGTACCTGTACGAGCATGGAGAATGA 1419 49.33 MISVANFFSIFFIVIHAFSLSSSSPVGGDHGGSSLIGAGCGLQPLRISNSLKNQSIGPLMSRLESQNCEVWTEACSEAILSLAKRPEVVDWLKKVRRRIHENPELAFEEFETSQLVRDELDRMDISYEHPLAKTGVRARIGTGGPPFVALRADMDALPIQEAVEWEHKSRVPGKMHACGHDAHVTMLLGAAKILKERENLLKGTVILLFQPAEEAGNGAKRMIGDGALKDVQAIFAVHVSHEHPTSVIGSRPGPLLAGCGFFRAVITGKKGRAGSPHRSVDPVVAASAAVVSLQGIVSREANPLDSQVVSVTSFNGGNNLDMIPDTVVIGGTFRAFSNSSFYQVLQRIEQVIVEQASVYRCSAMVDFFEKEYTIYPPTVNDEKMYEHVKKVAIDLHGSQNFRLVQPMMGAEDFSFYSEFVPAAFYYIGVRNETLGSIHTGHSPYFMIDENVLPIGAATHATIAERYLYEHGE 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11986661 11994271 + Lsi08G004400.1 Lsi08g00440 668366

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00440 472 PANTHER IAA-AMINO ACID HYDROLASE ILR1-LIKE 6 48 470 - -
Lsi08g00440 472 Pfam Peptidase dimerisation domain 262 356 IPR011650 -
Lsi08g00440 472 Gene3D - 257 375 - -
Lsi08g00440 472 SUPERFAMILY Bacterial exopeptidase dimerisation domain 258 366 IPR036264 -
Lsi08g00440 472 TIGRFAM amidohydrolases: amidohydrolase 94 455 IPR017439 GO:0016787
Lsi08g00440 472 PIRSF Amidohydrol_AmhX 79 471 IPR017439 GO:0016787
Lsi08g00440 472 SUPERFAMILY Zn-dependent exopeptidases 87 469 - -
Lsi08g00440 472 CDD M20_IAA_Hyd 92 467 IPR044757 GO:0009850|GO:0016787
Lsi08g00440 472 Pfam Peptidase family M20/M25/M40 149 464 IPR002933 GO:0016787
Lsi08g00440 472 PANTHER PEPTIDASE M20 FAMILY MEMBER 48 470 IPR017439 GO:0016787
Lsi08g00440 472 Gene3D Zn peptidases 94 452 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00440 K21604 IAR3, ILL6; jasmonoyl-L-amino acid hydrolase [EC:3.5.1.127] K14664 csv:101215789 868.996
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00510 Lsi-Chr4:4748600 Lsi08g00440 Lsi-Chr8:11986661 1.08E-165 dispersed
Lsi07g00552 Lsi-Chr7:5849410 Lsi08g00440 Lsi-Chr8:11986661 3.96E-54 dispersed
Lsi08g00440 Lsi-Chr8:11986661 Lsi09g00949 Lsi-Chr9:12248073 5.10E-11 dispersed
Lsi08g00440 Lsi-Chr8:11986661 Lsi06g00239 Lsi-Chr6:2746701 6.82E-169 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g253 . . . . . . . . Cmo04g02477 Cmo15g00685 . . . . Sed01g3120 . . Bhi04g01905 Tan11g1268 Cmetu03g0844 . Hepe02g2259 . Lcy10g1230 Cla08g00599 Cam08g1012 Cec08g0603 Cco08g0713 Clacu08g0724 . Cre08g0533 . . . Cone20ag0442 . . . Cme03g00543 Blo17g00176 . . Bda13g01480 . Bpe14g00384 . Bma02g00217 . . . . . Car04g02294 Car15g00620 Cpe01g02055 . . . . . . . . . . . . . . . Lsi08g00440 . Chy03g00792 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008544 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00440 Lsi_Chr08 FPKM 6.595238 6.018532 29.529081 34.483425 3.552913 3.807584 1.359736 0.875516 1.852545 0.925468