Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00441 ATGGAATTGAAAACAGAAGTAAAGGAAGTACAACACCATTTCCATGTACTGGCAGTGGATGATAGTCTTATAGATAGAAAGCTTTTGGAAAAACTCTTAACAATTTCTTCATGTGAAGTTACCTGTGTGGAATCTGGAGATAAAGCTCTTAGATATTTGGGTCTTCTTGATGATCTTGATAAATTTTCTTCTTCTTCTTCTGCTGCTGCTGCTTCATTTTCTTCCTCACAACTCTCCCAACAACAGGAAGTCAAAGTCAACCTAATCATGACAGATTACTGTATGCCTGGGATGAGTGGTTATGATCTACTCAAACGACTCAAGGTCAATTCCACTATCACCCTTTCAAACATACAACAATTTATGTGTTTGGAAGAAGGAGCAGAAGAATTCCTTCTAAAGCCTCTTCAACTATCAGACGTCAAGAAGCTTGAGCCTCACCTTCAAAAATCCCTCACTCGTTGTTCTGCAGATCAAATCAAGGAAGAAGAAATTACCACAGTCGGAATCGGAATCACCGATGCCATTGACGACGAACAGAATTTGAAATTAGAAGAGAGTAAGAAGAACGAGAATAGCATTAATAATAGCTTGAGCAAGAGAAAGGCAGCAAATCCAGAGCATTGTGAAGAAAGACGACCAAAAATGAAGGAATTACAAGCTGGAATATAA 672 38.39 MELKTEVKEVQHHFHVLAVDDSLIDRKLLEKLLTISSCEVTCVESGDKALRYLGLLDDLDKFSSSSSAAAASFSSSQLSQQQEVKVNLIMTDYCMPGMSGYDLLKRLKVNSTITLSNIQQFMCLEEGAEEFLLKPLQLSDVKKLEPHLQKSLTRCSADQIKEEEITTVGIGITDAIDDEQNLKLEESKKNENSINNSLSKRKAANPEHCEERRPKMKELQAGI 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12034744 12039794 + Lsi08G004410.1 Lsi08g00441 668367

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00441 223 ProSiteProfiles Response regulatory domain profile. 15 149 IPR001789 GO:0000160
Lsi08g00441 223 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 220 IPR045279 GO:0009736
Lsi08g00441 223 MobiDBLite consensus disorder prediction 186 223 - -
Lsi08g00441 223 Gene3D - 1 152 - -
Lsi08g00441 223 Pfam Response regulator receiver domain 16 142 IPR001789 GO:0000160
Lsi08g00441 223 SUPERFAMILY CheY-like 14 143 IPR011006 -
Lsi08g00441 223 SMART REC_2 14 145 IPR001789 GO:0000160
Lsi08g00441 223 PANTHER TWO-COMPONENT RESPONSE REGULATOR ORR4 8 220 - -
Lsi08g00441 223 MobiDBLite consensus disorder prediction 203 223 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00441 K14492 ARR-A; two-component response regulator ARR-A family - csv:101216267 277.715
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00441 Lsi-Chr8:12034744 Lsi09g00795 Lsi-Chr9:9086452 2.04E-45 dispersed
Lsi08g00441 Lsi-Chr8:12034744 Lsi03g01597 Lsi-Chr3:26990232 5.32E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g251 Blo01g01297 . . . Bpe02g00640 . . Bma01g02073 Cmo04g02481 Cmo15g00681 . . . . Sed01g3118 . . Bhi04g01902 Tan11g1266 Cmetu03g2252 . . . Lcy10g1232 Cla08g00600 Cam08g1013 Cec08g0604 Cco08g0714 Clacu08g0726 . Cre08g0534 . . Cone17ag1286 Cone20ag0441 . Csa04g01951 . Cme03g00540 . . . . . . . . . . . . . Car04g02296 Car15g00618 Cpe01g02057 . . . . . . . . . . . . . . . Lsi08g00441 . Chy03g00788 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000219 2 6 2 4 4 5 9 5 5 3 5 5 8 5 5 8 5 6 7 5 5 5 6 6 6 5 4 13 7 2 163
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25731 PF00072 Response_reg 3.10E-09 CL0304 Lsi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00441 Lsi_Chr08 FPKM 11.04796 11.633133 0.298451 0.0 8.542066 9.865714 9.364312 0.0 0.0 0.0