Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00442 ATGGCGTCTTCATCTTTCATTCGGTTCTTTCTGCTTGCTTCTGCTCTATTTTCTGCTTCTTTTATTGAGATCTACGCGGAAGAGGCTGAGGCGAAGGAATTTGTTCTTACTTTGGACAATTCCAACTTCTCCGATGTTGTTTCCAAGCATAACTTCATCGTCGTTGAGTTCTACGCCCCGTGGTGTGGACATTGTAAGAACCTGGCACCAGAGTATGAAAAAGCTGCGTCTGTTTTGAGCAGTCATGACCCTCCAATTGCTTTAGCCAAAGTTGATGCAAATGAAGAGTCAAACAGAGAGCTGGCAAGTCAATTTGAAATTAGGGGTTTCCCCACCATTAAGATACTCAGAAATGGGGGCAAATCAAGTCAGGATTACAAGGGACCTCGCGATGCAGATGGTATTGTTGACTACTTGAAGAAGCAAAGTGGGCCTGCATCTGCTGAAATAAAATCCGCAGAGGATGCTAGTAATCTCATTAAGAATGTTTTCATTGTTGGAATATTTCCCAAGCTTTCTGGAGAAGAGTTCGATAACTACATCGCTTTGGCTGAGAAGTTGCGTTCTGACTATGATTTTGGTCACACTTTGGATGCTAAGCTACTTCCACGTGGAGAAACATCTGTATCTGGCCCAATCGTTAGGCTTTTCAAGCCATTCGATGAACAATTTGTTGATTTTAAGGATTTTGATGCAGCCAAGTTGGAGAAATTCATCGAAGAATCTAGTATTCCCACGGTGACGGAGTTCAATAATGATCCTAGCAATCACGTATACCTTTCCAAGTTCTTCTCCAGTTCTATTGATAAGGCTATGTTCTTTCTGAATTACACCACTGAGGTCGCTGATTCTTTGAAATCCAAGTACCGTGAAGTTGCTGAACAGTACAAAGGAGAGGGAATAAGTTTCCTAATTGGAGACAGCCAATCCAGTCAAGCTGCTCTAAACTATTTTGGACTCAAGGAAGATCAAGTGCCTGTCCTTCTTGTGCAAAAAAATGATAGGTTTAAGTATGTGAAATCCAATGTGGAGGCTGATCAGATTGCTCCTTGGGTGAAGGAATACAAGAACGGCAATGTGCCACAATTCATAAAGTCAGAACCCATTCCTGAGAGTAACAATGAACCTGTGAAAGTGGTTGTTGCTGATAGCCTTCAGGATGTTGTCTATAAATCTGGAAAAAATGTTCTACTGGAATTTTATTCTCCATGGTGCGGGCACTGCAAAAAACTTGCCCCAACTTTAGAGGAGGTGGCTGTCTCATATGGAAGCGATCCTGATGTCATCATTGCTAAATTTGATGCCACGGCGAACGACATTGCAGATAGCGATTTCGATGTCCAAGGTTACCCTACTTTGTATTTCAGGTCAGCAAGCGGAAAGCTGGTGGAGTATAGCGGTGATAGATCCAAGGAAGACATCATAAATTTCATCGAGACAAACCGTGATAAAATCGCAGAGGCAACAAAACCCAAGGACACAGAGGCAGATTCAAAACCCAAGGACTCAAAACCAGATTCAGAAGCCAAGGATGAGCTCTAA 1542 42.54 MASSSFIRFFLLASALFSASFIEIYAEEAEAKEFVLTLDNSNFSDVVSKHNFIVVEFYAPWCGHCKNLAPEYEKAASVLSSHDPPIALAKVDANEESNRELASQFEIRGFPTIKILRNGGKSSQDYKGPRDADGIVDYLKKQSGPASAEIKSAEDASNLIKNVFIVGIFPKLSGEEFDNYIALAEKLRSDYDFGHTLDAKLLPRGETSVSGPIVRLFKPFDEQFVDFKDFDAAKLEKFIEESSIPTVTEFNNDPSNHVYLSKFFSSSIDKAMFFLNYTTEVADSLKSKYREVAEQYKGEGISFLIGDSQSSQAALNYFGLKEDQVPVLLVQKNDRFKYVKSNVEADQIAPWVKEYKNGNVPQFIKSEPIPESNNEPVKVVVADSLQDVVYKSGKNVLLEFYSPWCGHCKKLAPTLEEVAVSYGSDPDVIIAKFDATANDIADSDFDVQGYPTLYFRSASGKLVEYSGDRSKEDIINFIETNRDKIAEATKPKDTEADSKPKDSKPDSEAKDEL 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12044547 12050660 - Lsi08G004420.1 Lsi08g00442 668368

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00442 513 PANTHER PROTEIN DISULFIDE-ISOMERASE 18 502 - -
Lsi08g00442 513 PRINTS Thioredoxin family signature 106 117 - -
Lsi08g00442 513 PRINTS Thioredoxin family signature 53 61 - -
Lsi08g00442 513 PRINTS Thioredoxin family signature 61 70 - -
Lsi08g00442 513 Pfam Thioredoxin 35 141 IPR013766 -
Lsi08g00442 513 Pfam Thioredoxin 377 479 IPR013766 -
Lsi08g00442 513 Pfam Thioredoxin-like domain 169 353 - -
Lsi08g00442 513 SUPERFAMILY Thioredoxin-like 343 483 IPR036249 -
Lsi08g00442 513 TIGRFAM pdi_dom: protein disulfide-isomerase domain 39 142 IPR005788 GO:0003756
Lsi08g00442 513 TIGRFAM pdi_dom: protein disulfide-isomerase domain 381 480 IPR005788 GO:0003756
Lsi08g00442 513 Gene3D Glutaredoxin 371 486 - -
Lsi08g00442 513 Gene3D Glutaredoxin 26 142 - -
Lsi08g00442 513 Gene3D Glutaredoxin 246 370 - -
Lsi08g00442 513 MobiDBLite consensus disorder prediction 486 513 - -
Lsi08g00442 513 TIGRFAM ER_PDI_fam: protein disulfide isomerase 35 513 IPR005792 GO:0003756
Lsi08g00442 513 CDD PDI_b_family 147 241 - -
Lsi08g00442 513 ProSiteProfiles Thioredoxin domain profile. 354 483 IPR013766 -
Lsi08g00442 513 ProSitePatterns Thioredoxin family active site. 397 415 IPR017937 -
Lsi08g00442 513 SUPERFAMILY Thioredoxin-like 148 245 IPR036249 -
Lsi08g00442 513 PANTHER PROTEIN DISULFIDE ISOMERASE 18 502 - -
Lsi08g00442 513 SUPERFAMILY Thioredoxin-like 242 374 IPR036249 -
Lsi08g00442 513 CDD PDI_a_family 36 139 - -
Lsi08g00442 513 Gene3D Glutaredoxin 143 245 - -
Lsi08g00442 513 CDD PDI_a_PDI_a'_C 376 478 - -
Lsi08g00442 513 SUPERFAMILY Thioredoxin-like 35 145 IPR036249 -
Lsi08g00442 513 CDD PDI_b'_family 261 356 - -
Lsi08g00442 513 ProSitePatterns Thioredoxin family active site. 54 72 IPR017937 -
Lsi08g00442 513 ProSiteProfiles Thioredoxin domain profile. 15 144 IPR013766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00442 K09580 PDIA1, P4HB; protein disulfide-isomerase A1 [EC:5.3.4.1] - csv:101216516 907.131
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g02397 Lsi08g00442 CCT
Lsi04g02397 Lsi08g00442 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00200 Lsi-Chr4:2122885 Lsi08g00442 Lsi-Chr8:12044547 7.97E-09 dispersed
Lsi08g00442 Lsi-Chr8:12044547 Lsi03g00453 Lsi-Chr3:5134947 6.98E-14 dispersed
Lsi02g01416 Lsi-Chr2:19566310 Lsi08g00442 Lsi-Chr8:12044547 9.02E-70 transposed
Lsi02g02459 Lsi-Chr2:31099810 Lsi08g00442 Lsi-Chr8:12044547 7.55E-15 transposed
Lsi04g01231 Lsi-Chr4:19144326 Lsi08g00442 Lsi-Chr8:12044547 2.07E-08 transposed
Lsi07g00506 Lsi-Chr7:5314166 Lsi08g00442 Lsi-Chr8:12044547 9.55E-06 transposed
Lsi10g01563 Lsi-Chr10:20043301 Lsi08g00442 Lsi-Chr8:12044547 3.14E-06 transposed
Lsi04g02397 Lsi-Chr4:31118044 Lsi08g00442 Lsi-Chr8:12044547 5.18E-165 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g250 Blo01g01298 . . . Bpe02g00639 . . Bma01g02074 Cmo04g02483 Cmo15g00679 . Cma09g00787 . . Sed01g3115 Cpe06g00621 . Bhi04g01901 Tan11g1265 Cmetu07g2195 . . . . Cla08g00602 Cam08g1016 Cec08g0606 Cco08g0717 Clacu08g0727 . Cre08g0535 Cone4ag1414 Cone7ag1524 Cone17ag1287 Cone20ag0440 Lsi04g02397 Csa04g01791 . Cme03g00538 Blo17g00175 Blo18g00181 . . Bpe02g01646 Bpe14g00385 Bma01g00810 Bma02g00216 . . Cmo09g00779 . . Car04g02297 Car15g00617 Cpe01g02058 . . . . . . . . Cla11g01541 Cam11g1603 Cec11g1631 Cco11g1633 Clacu11g1759 Cmu11g1576 Cre11g1994 Lsi08g00442 . Chy07g00630 Cme07g00838
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003308 0 2 2 3 3 1 2 1 1 1 1 1 2 2 1 2 1 4 2 1 1 1 1 1 1 1 1 4 2 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00442 Lsi_Chr08 FPKM 11.021201 11.92429 0.375032 0.366817 3.618932 3.971076 3.632455 0.547195 0.106505 0.633975