Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00443 GCAAGAACAGGGTTGGATTTGCAGAACCGTGTTGCCAAACAAGGAGAGAGGCCGCAAAAAGGAAAGCCCCAAATGGCCGAGCGTTTGTCCCTACAACTGACACTTCCATCGCATTCATCCCCCATTGCTGCTGCTTCGAAAAACTCAATTTCAACTAAATCCATGGCTGCTACTGTTTTTGGAAGCGCCGCCGCCGCTGCCGCCTCCTCCTCCGCCTCATCAACCACTCGTTTCCTCTCCTCAGCCACCAGAGCTACACTATCTTTCTCTTCACGTTCACCATCGCTCCTCTCTCGCTCTTCGTCCTCGTCCTCTTTCAACTTCCTCCGATCGTCTCCTCTCATTTCTCACCTTTTTCTGAACCAGGGAAGGCCGAGTTCTTGTGTATCAAATAGAGGATTCTGTGCGGTATCTAATCCGAAATGCCTGGCATCGGACCCTGAGCAGTTGAAGAGTGCTAGAGAAGATATCAAGCAGCTCCTGAAGACCACATTCTGTCATCCTATTTTGGTATTTCTGTGGTTTATGATACGGATTCAACTTGAATCGTTTGGAACCATTTGTTTACGAGTTTCTCCGATTGAGTGTGTTACTTGTAATAATTGCCTGTTTATATTCGTACTAACTACCGCGCTTAAGTTGGAATTGGAAATAATTAGTAATGTTCGTGGTGGAGTTTTTAAAGTTTTGAAGAAGAGTCATGTACGCCTAGGTTGGCATGATGCTGGAACTTACAATAAAGATATTGAGGAATGGCCACAGAGAGGTGGAGCTAATGGAAGTTTAAGATTTGATGTTGAGCTGGGGCATGGTGCTAATGCTGGTCTTGTTAATGCCTTGAAACTCATTGAGCCTATCAAAAAGAAGTATTCTAACGTGACATATGCAGACCTATTTCAGCTGGCCAGTGCTACAGCTATCGAGGAGGCTGGAGGACCCAAAATCCCCATGAAGTATGGAAGGGTGGATGTTGTGGGGCCGGAGCAATGCCCCGAAGAGGGGAGACTTCCTGATGCTGGTCCTCCATCACCTGCTGGACATCTACGAGATGTTTTCTACAGAATGGGGTTGAATGACAAGGAAATAGTTGCACTATCTGGGGCACACACGTTAGGGAGAGCTAGGCCAGAACGCAGTGGTTGGGGCAAGCCAGAGACCAAATATACGAAAAATGGACCTGGTGCACCTGGTGGACAATCCTGGACCATACAATGGTTGAAGTTTGACAACTCATATTTTAAGGATATCAAAGAAAGGACAGATGAAGAATTACTGGTGTTGCCAACTGATGCTATTCTCTTTGAAGATCCAGCATTCAAGGTAAAACAGAACTACACGTTCCCCCACCCCATCCTTGCTCCCTTCAGGAGTCATTATCTTGGGCACCAAGACACATCTTCAATGGAGTTGGTCTTTTGTAAGGTTTATGCTGAAAAATATGTTGAAGATCAAGAAGCATTCTTCAAAGACTATGCTGAAGCCCATGCCAAACTCAGCAACCTTGGTGCTAAATTTGACCCTCCAGAGAGAGAGCTATCAGACTCAATGAAGCAGAAGATTCGGGCAGAATATGAAGGTTTTGGTGGAAGTCCAGATAAGCCTTTACCAACAAACTACTTCCTTAATATCATTGTTGTGATTGCTGTTTTGGCAATTTTGACATCCTTGCTTGGAAACTAA 1680 45.36 ARTGLDLQNRVAKQGERPQKGKPQMAERLSLQLTLPSHSSPIAAASKNSISTKSMAATVFGSAAAAAASSSASSTTRFLSSATRATLSFSSRSPSLLSRSSSSSSFNFLRSSPLISHLFLNQGRPSSCVSNRGFCAVSNPKCLASDPEQLKSAREDIKQLLKTTFCHPILVFLWFMIRIQLESFGTICLRVSPIECVTCNNCLFIFVLTTALKLELEIISNVRGGVFKVLKKSHVRLGWHDAGTYNKDIEEWPQRGGANGSLRFDVELGHGANAGLVNALKLIEPIKKKYSNVTYADLFQLASATAIEEAGGPKIPMKYGRVDVVGPEQCPEEGRLPDAGPPSPAGHLRDVFYRMGLNDKEIVALSGAHTLGRARPERSGWGKPETKYTKNGPGAPGGQSWTIQWLKFDNSYFKDIKERTDEELLVLPTDAILFEDPAFKVKQNYTFPHPILAPFRSHYLGHQDTSSMELVFCKVYAEKYVEDQEAFFKDYAEAHAKLSNLGAKFDPPERELSDSMKQKIRAEYEGFGGSPDKPLPTNYFLNIIVVIAVLAILTSLLGN 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12057638 12063564 - Lsi08G004430.1 Lsi08g00443 668369

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00443 559 MobiDBLite consensus disorder prediction 1 25 - -
Lsi08g00443 559 CDD ascorbate_peroxidase 235 506 - -
Lsi08g00443 559 Gene3D Peroxidase, domain 2 339 441 - -
Lsi08g00443 559 PRINTS Haem peroxidase superfamily signature 311 323 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi08g00443 559 PRINTS Haem peroxidase superfamily signature 401 416 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi08g00443 559 PRINTS Haem peroxidase superfamily signature 293 310 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi08g00443 559 PRINTS Haem peroxidase superfamily signature 231 245 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi08g00443 559 PRINTS Haem peroxidase superfamily signature 361 376 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi08g00443 559 SUPERFAMILY Heme-dependent peroxidases 232 441 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi08g00443 559 PRINTS Plant ascorbate peroxidase signature 311 323 IPR002207 GO:0004601|GO:0006979|GO:0020037
Lsi08g00443 559 PRINTS Plant ascorbate peroxidase signature 231 246 IPR002207 GO:0004601|GO:0006979|GO:0020037
Lsi08g00443 559 PRINTS Plant ascorbate peroxidase signature 292 310 IPR002207 GO:0004601|GO:0006979|GO:0020037
Lsi08g00443 559 ProSiteProfiles Plant heme peroxidase family profile. 235 528 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi08g00443 559 MobiDBLite consensus disorder prediction 374 396 - -
Lsi08g00443 559 Pfam Peroxidase 232 440 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi08g00443 559 ProSitePatterns Peroxidases proximal heme-ligand signature. 361 371 IPR019793 -
Lsi08g00443 559 PANTHER L-ASCORBATE PEROXIDASE 8, CHLOROPLASTIC-RELATED 235 514 - -
Lsi08g00443 559 PANTHER L-ASCORBATE PEROXIDASE 8, CHLOROPLASTIC-RELATED 517 559 - -
Lsi08g00443 559 PANTHER L-ASCORBATE PEROXIDASE 8, CHLOROPLASTIC-RELATED 66 173 - -
Lsi08g00443 559 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 517 559 IPR044831 GO:0004601|GO:0034599
Lsi08g00443 559 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 235 514 IPR044831 GO:0004601|GO:0034599
Lsi08g00443 559 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 66 173 IPR044831 GO:0004601|GO:0034599
Lsi08g00443 559 SUPERFAMILY Heme-dependent peroxidases 474 505 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi08g00443 559 Gene3D - 234 338 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00443 K00434 E1.11.1.11; L-ascorbate peroxidase [EC:1.11.1.11] - csv:101216755 539.265
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00443 Lsi-Chr8:12057638 Lsi10g01317 Lsi-Chr10:17378750 1.14E-34 dispersed
Lsi08g00443 Lsi-Chr8:12057638 Lsi11g01196 Lsi-Chr11:20441725 3.22E-57 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g248 . . . . . . . . Cmo04g02484 Cmo15g00678 . . . . Sed01g3111 . . Bhi04g01899 Tan11g1263 Cmetu03g1741 . Hepe02g2244 . . Cla08g00603 Cam08g1017 Cec08g0607 Cco08g0718 Clacu08g0728 . Cre08g0536 . Cone7ag1522 Cone17ag1289 Cone20ag0439 . . . Cme03g00534 Blo17g00174 . . Bda13g01479 Bpe02g01647 Bpe14g00386 Bma01g00808 Bma02g00215 . . . . . Car04g02298 Car15g00616 Cpe01g02059 . . . . . . . . . . . . . . . Lsi08g00443 . Chy03g00786 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003748 3 2 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 4 1 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00443 Lsi_Chr08 FPKM 0.50302 0.830824 0.313788 0.172691 2.022723 2.459656 2.206434 0.0 0.0 0.286212