Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00445 ATGGCGTCCTCGACGAGCATTTCTAGGTCCCAAAGACCTTCTAACATCTCGCCATTCCGCTCACGGAAGTCTCCGGCGGTTTCACCGGCGCCCAGGCCGAATGGTCGACCTACGACTCCTTCTTCCACGACGTCTTCGAGGCCTCCGTCGAAGGTTTCGGTTTCTCCGGTGACAATTGCTAGTTGTACACCGAGCCCTCCTACTCCCGCACTTGACCGTCTCGATGTCATGAAGGCTAAAGAAAATGTGACAGTCACGGTTAGGTTCAGACCTCTAAGTGTTCGAGAGCTTAACAAAGGAGATGAGATAGCTTGGTATGCGGACGGAGAATACACAGTGAGGAACGAATTCAACTCATCCATCGCTTATGGATTTGATAGAGTTTTTGGTCCAGCGACAACGACTCGTCATGTATACGATGTTGCTGCTCAGCAAGTTGTTGCCGGTGCAATGAACGGAATCAATGGTACTGTTTTTGCATATGGTGTCACTAGCAGTGGTAAGACTCATACCATGCATGGAGAGCAAAAGTCACCTGGAGTTATCCCATTGGCAGTGAAAGATGTATTCGGAATTATACAAGAGACACCTGAGCGGCAGTTTCTTCTTCGTGTTTCATATCTAGAGATCTACAACGAGGTCATCAATGATTTACTTGATCCTACAGGTCAGAATCTACGAGTACGAGAGGATGCTCAGGGAACTTATGTTGAGGGCATCAAAGAAGAAGTTGTGTTGTCCCCCGCTCATGCTCTTTCCTTGATAGCATCTGGAGAAGGATCTGAAAGCTCAAAAACAGAAACAACTGGTTTGCGGAGAAAAGAGGGTTCATACATCAATAAAAGCTTACTGACTCTGGGCACTGCTGGGCTCAGTTGGAGATTTGTCCATGGGTCTCTGAGAAATGCCCTTGGGAGGCAACTTGAACTCTCATGGAATCACATTAGCAATACTGAGGAGACGCACAACACCTTAAAGTTTGCACATCGAAGCAAGCGTGTTGAAATTAAAGCTGCTCAAAATAAGGCAAGTTTTATCATAGATGAGAAATCTCTCATCAAAAAGTATCAGAGGGAAATTTCCAATTTAAAGCAGGAGCTTCAGCAATTAAAGCGTGGCATAATGGAGAACCCTAGTACAACTACATTGTCTACACAAGAAGATTTGGTCAATTTGAAGCTTCAGCTGGAAGCTGATCAGGTTAAATTACAATCGAGATTGGAAGAGGAAGAAGAAGCAAAGGCTGCTTTGATGGGGAGAATTCAAAGGTTGACAAAACTAATCCTAGTTTCTACTAAAAATGCTTTGCCATCAAGTGTCGCTGAAAAGCCAGGACAAAGAAGGAGGCATTCTTTTGGTGAAGATGAGCTGGCATATTTGCCTGATAGAAAACGGGACTACCTGAATGATGATGATGGTGGGAGTTGTGCTTCTGGGGTTTCAGTGGATGGAAGAGATGATGTTGTAAATCTAGATGATTTGGTTAAAGATATGAAAAGTAACAGAAAACGTGGAATGCTTGGCTGGTTTAAAATCAGAAGGCCCGAGAATGCTATAGGACCATCATCAACTACTGATACTGGGAGTTCTACTGGTGAATCACCTGCATCTCGTTCAAAAGCTTCTCAAAATCGGATGATACCTGATGAATTGAAGAATGGAAGGAGGAAATCAATTTGCAAAAAGGGAGATGATTCTTCCATTATTTACTCATCGCAAGAGAGAACACAAGCAGACTCAAATTATCTGACTGGGTCTACTCTTACTGACCAGATGGATCTTCTTTGTGAGCAAGTCAAAATGTTGGCTGGGGAGGTTGCCTTGTGTACTAGTTCACTGAAAAGACTGTCAGAGCAAGCAGCCAGGAACCCTGAAGATTCCCAAATCAAGGAACATATACAAAAGTTGAAGGATGAAATTAGTGAAAAGAAGCTCCAAATACGAGTTTTGGAGCAACGCATGATTGGATCTGTTGAATTGTCGCCACAAATTTCAAGTAGCATTGAATTGAGTCAGGCCTTATCAAAGCTCACTGCTCAACTTAATGAAAAAATTTTTGAACTAGAGATTAAATCGGCAGACAATAGGATACTTCAGGAGCAGCTGCAAATGAAGACAGCAGAAAATGCCGAGTTGCAAGAGTCAATTTTAAGGGCGCAACAAGAGTCATCATCCCAGAATCACTCGAGCAATTCTCAGAAAAATGAAGATGATGAGGCTTCTCAGCATCTTCCAAACTACTCTATATGGACAACGGTTGAAGCACGGCATAAATACAGCCCATGGGAGGATAAATACGCTGAAGAAAACACCCCGACTAGTGTCATGAGCTTGAATAGAGTTTTGACCCTGGACGACTCTAAAGATTGCAACAGCGACAAGTTTTGTCATTCCCAAGTTATGCAGGCTGAGATAGAAAATTTGAAGCAAGAGAAGGTGAGACTGATTGAAGAAAAGGAAGGTCTCGAGATTCAGAGTCGTAAACTTGCCGAAGAAGCTTCATATGCAAAGGAGTTAGCTTCAGCTGCTGCAATTGAGCTCCAAAACTTAGCTGAAGAAGTTACCAAACTTTCTTATGAAAATGCCAAACTTACTGGTGACCTTACAAATGCTAAGGACAGTTACTGCAGATCATGCTATGCACAAAGGTCTTATGATTCAAAGCACCATATTGGTAGCGCTAGATATCAAAGAGAAGCTGCACTTGAGAAGGCGATATTCGAAAGAGACCAAAGAGAAGCTGAGCTATATCGAAGACTCGAAGAGGCGAAGCGCCACGAAGAAGATATGGAAAATGAACTAGCAAATATGTGGGGACTATTTGCCAAAATGAGAAAGTCCGAACTAAATATTGAGGATATGTCATTTGAGGGAGTTCGTCCATCCTACCTTTTACAAGGCCGAGCTAAAAACGGTTATATCTCATCCAATGGCGTCTCTAACAGACCGTTGGAAGACGATGCCATATTTATCGATGAAATGAGAGCTGGCAATAGGAAAGAGAGGATCAGATGTAGAGATCTGGAAAGCTTTGTTTCCCAAATGAAGGTATGA 3054 42.99 MASSTSISRSQRPSNISPFRSRKSPAVSPAPRPNGRPTTPSSTTSSRPPSKVSVSPVTIASCTPSPPTPALDRLDVMKAKENVTVTVRFRPLSVRELNKGDEIAWYADGEYTVRNEFNSSIAYGFDRVFGPATTTRHVYDVAAQQVVAGAMNGINGTVFAYGVTSSGKTHTMHGEQKSPGVIPLAVKDVFGIIQETPERQFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQGTYVEGIKEEVVLSPAHALSLIASGEGSESSKTETTGLRRKEGSYINKSLLTLGTAGLSWRFVHGSLRNALGRQLELSWNHISNTEETHNTLKFAHRSKRVEIKAAQNKASFIIDEKSLIKKYQREISNLKQELQQLKRGIMENPSTTTLSTQEDLVNLKLQLEADQVKLQSRLEEEEEAKAALMGRIQRLTKLILVSTKNALPSSVAEKPGQRRRHSFGEDELAYLPDRKRDYLNDDDGGSCASGVSVDGRDDVVNLDDLVKDMKSNRKRGMLGWFKIRRPENAIGPSSTTDTGSSTGESPASRSKASQNRMIPDELKNGRRKSICKKGDDSSIIYSSQERTQADSNYLTGSTLTDQMDLLCEQVKMLAGEVALCTSSLKRLSEQAARNPEDSQIKEHIQKLKDEISEKKLQIRVLEQRMIGSVELSPQISSSIELSQALSKLTAQLNEKIFELEIKSADNRILQEQLQMKTAENAELQESILRAQQESSSQNHSSNSQKNEDDEASQHLPNYSIWTTVEARHKYSPWEDKYAEENTPTSVMSLNRVLTLDDSKDCNSDKFCHSQVMQAEIENLKQEKVRLIEEKEGLEIQSRKLAEEASYAKELASAAAIELQNLAEEVTKLSYENAKLTGDLTNAKDSYCRSCYAQRSYDSKHHIGSARYQREAALEKAIFERDQREAELYRRLEEAKRHEEDMENELANMWGLFAKMRKSELNIEDMSFEGVRPSYLLQGRAKNGYISSNGVSNRPLEDDAIFIDEMRAGNRKERIRCRDLESFVSQMKV 1017
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12082865 12095369 - Lsi08G004450.1 Lsi08g00445 668371

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00445 1017 Coils Coil 346 373 - -
Lsi08g00445 1017 MobiDBLite consensus disorder prediction 518 546 - -
Lsi08g00445 1017 PANTHER CENTROMERE PROTEIN E 70 259 - -
Lsi08g00445 1017 Coils Coil 393 427 - -
Lsi08g00445 1017 Coils Coil 633 653 - -
Lsi08g00445 1017 MobiDBLite consensus disorder prediction 517 560 - -
Lsi08g00445 1017 Coils Coil 798 832 - -
Lsi08g00445 1017 Coils Coil 847 867 - -
Lsi08g00445 1017 MobiDBLite consensus disorder prediction 719 742 - -
Lsi08g00445 1017 Gene3D Kinesin motor domain 260 380 IPR036961 -
Lsi08g00445 1017 Pfam Kinesin motor domain 88 260 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi08g00445 1017 Coils Coil 690 722 - -
Lsi08g00445 1017 ProSiteProfiles Kinesin motor domain profile. 82 259 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi08g00445 1017 MobiDBLite consensus disorder prediction 1 68 - -
Lsi08g00445 1017 PANTHER KINESIN-LIKE PROTEIN KIN-7C, MITOCHONDRIAL 70 259 - -
Lsi08g00445 1017 PANTHER KINESIN-LIKE PROTEIN KIN-7C, MITOCHONDRIAL 260 288 - -
Lsi08g00445 1017 PANTHER KINESIN-LIKE PROTEIN KIN-7C, MITOCHONDRIAL 316 1016 - -
Lsi08g00445 1017 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 372 IPR027417 -
Lsi08g00445 1017 SMART kinesin_4 80 342 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi08g00445 1017 MobiDBLite consensus disorder prediction 1 22 - -
Lsi08g00445 1017 PANTHER CENTROMERE PROTEIN E 260 288 - -
Lsi08g00445 1017 PANTHER CENTROMERE PROTEIN E 316 1016 - -
Lsi08g00445 1017 Coils Coil 913 933 - -
Lsi08g00445 1017 Gene3D Kinesin motor domain 73 259 IPR036961 -
Lsi08g00445 1017 MobiDBLite consensus disorder prediction 37 65 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00445 K11498 CENPE; centromeric protein E - csv:101218642 1231.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01967 Lsi-Chr1:25659340 Lsi08g00445 Lsi-Chr8:12082865 0 dispersed
Lsi08g00445 Lsi-Chr8:12082865 Lsi11g01135 Lsi-Chr11:19823003 1.32E-22 dispersed
Lsi08g00445 Lsi-Chr8:12082865 Lsi10g00409 Lsi-Chr10:6214377 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g245 . Blo12g00619 . . . Bpe04g00538 . . . Cmo15g00677 . . . . . . . Bhi04g01895 . . . . . Lcy10g1236 Cla08g00606 Cam08g1019 Cec08g0609 Cco08g0720 Clacu08g0730 . Cre08g0538 . . . Cone20ag0437 . . . Cme03g00530 Blo17g00172 . . . . Bpe14g00387 . Bma02g00214 . . . . . . Car15g00615 . . . . . . . . . . . . . . . . Lsi08g00445 . Chy03g00784 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010749 0 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00445 Lsi_Chr08 FPKM 9.518119 11.399772 9.406494 10.72671 10.385271 10.510594 10.082798 11.543298 12.665257 13.577647