Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00447 ATGTCGGAAGTAATTGCCGTGATGGATATTGACGACGATAACGGCAACAAAGAAGCTGAAAAGCCAGTCAAGGGCAAAAACGTTGCCAGTCCTGCCGCCACACCGGAGGGCAAAGCAATACCCTGGGTCGAGAAGTTCCGCCCTAAGTCTCTCGCTGATGTTGCTGCTCACCGCGACATTGTGGACACCATCGACAAGCTGACGAGTGAGAATAGGTTGCCACATCTCCTGTTGTACGGCCCTCCTGGCACTGGCAAGACATCAACTATTCTAGCGGTTGCTCGCAAGCTTTATGGAACAAACTACCACAACATGATTCTGGAGCTGAACGCATCAGATGATAGAGGGATAGATGTTGTCAGACAGCAGATTCAGGATTTTGCAAGTACCCAAAGCTTTTCATTTGGGGCAAAGGCGTCCGTAAAATTGGTATTATTGGACGAGGCAGATGCCATGACTAAAGATGCACAGTTTGCTTTACGTAGAGTAATTGAGAAATACACGAAAAATACAAGATTTGCTCTTATCTGTAATCACGTCAATAAGATTATTCCAGCATTACAATCAAGGTGTACCCGCTTTCGATTTGCTCCCCTTGACAACTTTCATGTCACTGAACGACTCAAATATGTTATTGAGGCTGAGAGGTTGGATGTCACTGAGAGTGGCTTAGCTGCCCTTGTTCGACTTTGCAGTGGTGATATGAGAAAGGCCTTAAATATTCTGCAGTCAACGCATATGGCTTCACAGCATATTACTGAAGAAGCTGTATACCTTTGCACAGGAAATCCAATGCCTAAAGACATAGAGCAAATATCATTTTGGCTGCTGAATGAACCATTTTCTGACAGTTTTAAGCGAATATCTGAAATAAAGACCAGAAAAGGATTGGCTTTGGTTGATATAGTGAGAGAAGTCACTCTGTTCGTTTTTAAGATAAAGATGCCATCGGATATCAGAGTCCAGTTGATTAATGATCTGGCTGACATAGAGTACCGGATGAGTTTCGGATGCAATGACAAGTTACAACTTGGATCGCTCATCTCATCTTTTACACGAGCTAGATCTGCACTCGTCGCTGCTGCACAGTAG 1092 44.14 MSEVIAVMDIDDDNGNKEAEKPVKGKNVASPAATPEGKAIPWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLKYVIEAERLDVTESGLAALVRLCSGDMRKALNILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALVDIVREVTLFVFKIKMPSDIRVQLINDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVAAAQ 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12109074 12114841 + Lsi08G004470.1 Lsi08g00447 668373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00447 363 SUPERFAMILY post-AAA+ oligomerization domain-like 264 354 IPR008921 GO:0003677|GO:0006260
Lsi08g00447 363 Pfam Replication factor C C-terminal domain 264 350 IPR013748 -
Lsi08g00447 363 CDD AAA 60 198 - -
Lsi08g00447 363 SMART AAA_5 72 202 IPR003593 -
Lsi08g00447 363 CDD HLD_clamp_RFC 203 261 - -
Lsi08g00447 363 Gene3D - 264 361 - -
Lsi08g00447 363 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 36 359 - -
Lsi08g00447 363 PANTHER REPLICATION FACTOR C SUBUNIT 5 36 359 - -
Lsi08g00447 363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 257 IPR027417 -
Lsi08g00447 363 MobiDBLite consensus disorder prediction 10 24 - -
Lsi08g00447 363 MobiDBLite consensus disorder prediction 1 34 - -
Lsi08g00447 363 Gene3D - 35 198 IPR027417 -
Lsi08g00447 363 Pfam ATPase family associated with various cellular activities (AAA) 76 196 IPR003959 GO:0005524|GO:0016887
Lsi08g00447 363 Gene3D - 202 263 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02414 Lsi-Chr4:31276383 Lsi08g00447 Lsi-Chr8:12109074 3.50E-29 dispersed
Lsi05g00768 Lsi-Chr5:10801910 Lsi08g00447 Lsi-Chr8:12109074 2.79E-15 dispersed
Lsi07g00785 Lsi-Chr7:8631913 Lsi08g00447 Lsi-Chr8:12109074 1.35E-11 dispersed
Lsi07g01383 Lsi-Chr7:20093678 Lsi08g00447 Lsi-Chr8:12109074 7.96E-35 dispersed
Lsi08g00447 Lsi-Chr8:12109074 Lsi10g01127 Lsi-Chr10:15509515 1.39E-12 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00447 K10756 - csv:101217230 690.649