Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00451 ATGGATCAAGAACCAGAGGAATTATTTGAGACCATCTCTCAAGCGCTGCTGTCTTCTGTGGATAGGGACTGTTTGAGTGGATGGGGAGGGCATGTCTATGTTGTGCTGCAGCCCAGGGCAATGGAGTTCACGAGTGAAATGCAAGACTTTCATGCTGGGCTGAAACTTAGAGGCCGTCGTGGAATCGCCAAGAGGCAAGAGCAAGAGGATCAGCAGCAGCAGCTTCCCCAAAGGATTTCTCTTGCTTATGTTGAACAGGTGAACTCAGATTTAATCATGGCCTTAGCAATGCAGCAGCAGCAGGAGCACGAGAGGGCCTATACGATGCTGGAGACCATTGAAAGTGATAGCGACGAAGACGGAATTTCAGACTCCAACGGCAACAGTGGTCTCGATACCAATGCCTCCTCACGAAGGCAAGAACTTCTCTCCCGGTGGGCTTTTTTGGAAGATGATGAGGAGACTACCGATGAAAATGAAGATATGGAAGAAGATGAAGATGGGGATTTTGGGGTTTTTGATTTGGATGAACTAACTTATGAAGAGTTGATTGCATTAGGGGAGTTCATTGGAGAAGAAAAGAGGGGCCTACCGATGAACGAAATACCTTCATGCTTGCACTCGAGCAAGTTTCAAGCCATCGAAAACAGAAGCGGGATAGATCGGTGTGTGATTTGCCAAGTTGAATATGAAGATGGTGAAGAATTGGCTGCTCTTTCATGTGAGCATCCTTATCATTCAGAATGTATAGGCAAATGGCTTCAAATCAAAAGGGTTTGTCCAATATGTGGTGCAGAAGTTTCATCCCCTAAGGTTTCTAAAAATGCATAA 831 45.73 MDQEPEELFETISQALLSSVDRDCLSGWGGHVYVVLQPRAMEFTSEMQDFHAGLKLRGRRGIAKRQEQEDQQQQLPQRISLAYVEQVNSDLIMALAMQQQQEHERAYTMLETIESDSDEDGISDSNGNSGLDTNASSRRQELLSRWAFLEDDEETTDENEDMEEDEDGDFGVFDLDELTYEELIALGEFIGEEKRGLPMNEIPSCLHSSKFQAIENRSGIDRCVICQVEYEDGEELAALSCEHPYHSECIGKWLQIKRVCPICGAEVSSPKVSKNA 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12149449 12153454 - Lsi08G004510.1 Lsi08g00451 668377

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00451 276 SUPERFAMILY RING/U-box 222 270 - -
Lsi08g00451 276 Pfam Ring finger domain 222 263 IPR001841 -
Lsi08g00451 276 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 69 272 - -
Lsi08g00451 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 273 IPR013083 -
Lsi08g00451 276 MobiDBLite consensus disorder prediction 122 136 - -
Lsi08g00451 276 SMART ring_2 223 263 IPR001841 -
Lsi08g00451 276 MobiDBLite consensus disorder prediction 148 167 - -
Lsi08g00451 276 MobiDBLite consensus disorder prediction 116 136 - -
Lsi08g00451 276 ProSiteProfiles Zinc finger RING-type profile. 223 263 IPR001841 -
Lsi08g00451 276 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 69 272 IPR033276 GO:0004842|GO:0016567|GO:0046621
Lsi08g00451 276 MobiDBLite consensus disorder prediction 151 167 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00451 K19045 BB; E3 ubiquitin-protein ligase BIG BROTHER and related proteins [EC:2.3.2.27] - csv:101217935 311.612
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00515 Lsi-Chr6:6265637 Lsi08g00451 Lsi-Chr8:12149449 1.30E-15 dispersed
Lsi08g00451 Lsi-Chr8:12149449 Lsi08g01487 Lsi-Chr8:23031183 6.64E-14 dispersed
Lsi08g00451 Lsi-Chr8:12149449 Lsi07g00308 Lsi-Chr7:3298977 1.26E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g241 . . . . . . . . Cmo04g02489 . . . . . Sed01g3107 . . Bhi04g01887 Tan11g1255 Cmetu03g0877 . Hepe02g2233 . Lcy10g1240 Cla08g00611 Cam08g1025 Cec08g0614 Cco08g0726 Clacu08g0735 . Cre08g0543 . . . . . . . . . Blo18g00179 . Bda01g01452 Bpe02g01648 . . . . . . . . Car04g02303 . . . . . . . . . . . . . . . . . Lsi08g00451 . Chy03g00769 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007823 3 3 1 0 1 1 2 1 1 1 1 1 3 1 1 2 1 1 0 1 1 1 1 1 0 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00451 Lsi_Chr08 FPKM 0.582766 0.0 0.418128 1.465275 0.0 1.279634 0.625801 0.0 0.0 0.0