Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00452 ATGTCGATCTTTGAGTATAATGGAAGTGCTGTAGTCGCGATGGTGGGGAAGAATTGCTTTGCCATTGCCAGTGATCGTAGGCTTGGTGTTCAGCTGCAGACTATTGCCACAGATTTCCAGAAAATTTACAGGATTCATGATAAGCTATTTCTCGGCCTTTCGGGCCTTGGTACCGATGCTCAGACACTGTATCAACGGCTTGTTTATCAGCACAAACTGTACCAACTTCGTGAAGAGAGGGACATGAAGCCTGAGACATTTGCTAGCCTTGTCTCAGCTCGTCTTTATGAGAAAAGGTTTGGTCCATATTTCTGCCAGCCTGTAATTGCTGGATTGAGTGATGACGACAAGCCCTTCATTTGCACGATGGATTCCATTGGGGCCAAAGAGCTGGCTAAGGATTTTGTTGTTTCTGGTACTGCATCGGAGTCCCTTTATGGTGCTTGTGAGGCAATGTTTAAACCTGACATGGTATGTTGGTATAGTCCATTTACATATGCTTTATTCGTCATTGGGATTCTAAATTGCTTCGCATGA 537 44.51 MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQKIYRIHDKLFLGLSGLGTDAQTLYQRLVYQHKLYQLREERDMKPETFASLVSARLYEKRFGPYFCQPVIAGLSDDDKPFICTMDSIGAKELAKDFVVSGTASESLYGACEAMFKPDMVCWYSPFTYALFVIGILNCFA 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12153594 12156398 - Lsi08G004520.1 Lsi08g00452 668378

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00452 178 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 4 157 - -
Lsi08g00452 178 Pfam Proteasome subunit 7 157 IPR001353 GO:0005839|GO:0051603
Lsi08g00452 178 PANTHER PROTEASOME SUBUNIT BETA 4 157 - -
Lsi08g00452 178 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 4 157 IPR029055 -
Lsi08g00452 178 ProSitePatterns Proteasome beta-type subunits signature. 12 59 IPR016050 GO:0005839|GO:0051603
Lsi08g00452 178 CDD proteasome_beta_type_3 6 157 IPR033811 GO:0019774|GO:0043161
Lsi08g00452 178 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 1 159 IPR029055 -
Lsi08g00452 178 ProSiteProfiles Proteasome beta-type subunit profile. 8 178 IPR023333 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00452 K02735 PSMB3; 20S proteasome subunit beta 3 [EC:3.4.25.1] - csv:101218171 308.916
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01961 Lsi-Chr5:26741154 Lsi08g00452 Lsi-Chr8:12153594 7.40E-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g239 . . . . Bpe02g00636 . . Bma01g02077 Cmo04g02490 Cmo15g00672 . . . . Sed11g1620 . . Bhi04g01885 Tan11g1888 Cmetu03g0875 . Hepe02g2232 . . Cla08g00612 Cam08g1026 Cec08g0615 Cco08g0727 Clacu08g0736 . Cre08g0544 . . . Cone20ag0434 . . . Cme03g00522 . . . . . . . . . . . . . . . Cpe01g02064 . . . . . . . . . . . . . . . Lsi08g00452 . Chy03g00768 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009335 0 1 0 1 1 1 0 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 0 4 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00452 Lsi_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0