Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00454 ATGCCTTCATTGTCATTCAAACCTCTTCTTCTAATGACGAAGAGCCTCAGACCCACTCCACCCTCCACTCCCTCCGCCAAGCCATCGCCACCGCCACCGTCATCGCCGCGGTCTCCTCCGACCCCTCAGCTCTCCCATTCAAACCCAACCACCGTCTCCATCCACCACTCATCCAACAACCAAAACAAAACCCTAACCCTCCTAAAATCCCCCCACCATTCCCTATCTTCCTCCAATTGGATCTCTCTAAATCTCACCAGATCAGACCTCTCTTTGCCTCTCACTTTCCCCACCGGCCAAACCTTCCGCTGGAAACAAACCAGCCCCCTTCACTTCACCGGCGTCGTTGGCTCTCATCTTATCTCTCTCAACCATCTTCCAAACGGCGACGTTTCATATTGCCTTCACTCTTGTTCTACATCCTCCTCCTCCACCTCCTCCGCCGCCGCCAGATTGGCCTTGCTTGATTTCCTTAACGCCGGCATCTCCCTGAGTGCCATTTGGGAGGTTTTCTCGGCGGCTGATCCGAGATTCGATGAGTTGGCTCGCCATTTGGAGGGGGCTCGAGTTCTCAGGCAAGACCCACTTGAATGTTTGATTCAGTTTTTGTGTTCTTCCAATAATAATATTGGGAGAATCACTAAAATGGTGGATTATATCTCATCACTTGGGAATTATTTGGGTAATGTTGGAGGTTTTGATTTCTATGAATTCCCCTCTTTGGAGAGGCTGTCCTTGGTCTCTGAGGCTGAGCTTAGAGAAGCAGGCTTTGGTTACAGGGCTAAATACATAATTGGCACTGTAAATGCACTAAAGGCCAAACCTGGGGGAGGTGCAGAATGGCTTCTGTCCCTTCGTGATTCGGATCTTGAAGAGGTGATTGAAGCCCTTGCTACATTACCGGGCGTAGGTCCGAAGGTAGCAGCTTGTGTTGCTCTCTTCTCTCTCGATCAGCACCACGCCATTCCTGTTGACACGCATGTCTGGCAGTTGATTGAAAAGTTTCTTGTTGTGTGGGATGAAAAGATTGCTACTAGGTACCTTGTCCCCGAGCTTGCTGGTGCACGTCTAACGCCAAAGCTATGCAATCGTGTGGCTGAGGCATTTGTCAGCAAATATGGAAAATATGCTGGTTGGGCTCAAACTCTGCTTTTCGTCGCTGATTTGCCTCAACAGAAGGCCCTCTTAACTGCAGATCTTGAGAATACCAAAAGAAAAAGATCTACAAAGCAGCAGAAGGATAAAGCACATGAGCAAGATCCGTAG 1266 49.37 MPSLSFKPLLLMTKSLRPTPPSTPSAKPSPPPPSSPRSPPTPQLSHSNPTTVSIHHSSNNQNKTLTLLKSPHHSLSSSNWISLNLTRSDLSLPLTFPTGQTFRWKQTSPLHFTGVVGSHLISLNHLPNGDVSYCLHSCSTSSSSTSSAAARLALLDFLNAGISLSAIWEVFSAADPRFDELARHLEGARVLRQDPLECLIQFLCSSNNNIGRITKMVDYISSLGNYLGNVGGFDFYEFPSLERLSLVSEAELREAGFGYRAKYIIGTVNALKAKPGGGAEWLLSLRDSDLEEVIEALATLPGVGPKVAACVALFSLDQHHAIPVDTHVWQLIEKFLVVWDEKIATRYLVPELAGARLTPKLCNRVAEAFVSKYGKYAGWAQTLLFVADLPQQKALLTADLENTKRKRSTKQQKDKAHEQDP 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12180202 12184266 - Lsi08G004540.1 Lsi08g00454 668380

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00454 421 SUPERFAMILY TATA-box binding protein-like 77 193 - -
Lsi08g00454 421 PANTHER N-GLYCOSYLASE/DNA LYASE 78 414 - -
Lsi08g00454 421 Pfam HhH-GPD superfamily base excision DNA repair protein 200 340 IPR003265 GO:0006284
Lsi08g00454 421 Pfam 8-oxoguanine DNA glycosylase, N-terminal domain 82 199 IPR012904 GO:0003684|GO:0006289|GO:0008534
Lsi08g00454 421 SUPERFAMILY DNA-glycosylase 194 388 IPR011257 GO:0003824|GO:0006281
Lsi08g00454 421 Gene3D - 168 389 IPR023170 -
Lsi08g00454 421 Gene3D Hypothetical protein; domain 2 194 318 - -
Lsi08g00454 421 MobiDBLite consensus disorder prediction 21 43 - -
Lsi08g00454 421 MobiDBLite consensus disorder prediction 44 58 - -
Lsi08g00454 421 CDD ENDO3c 197 354 IPR003265 GO:0006284
Lsi08g00454 421 MobiDBLite consensus disorder prediction 400 421 - -
Lsi08g00454 421 PANTHER 8-OXOGUANINE DNA GLYCOSYLASE 78 414 - -
Lsi08g00454 421 MobiDBLite consensus disorder prediction 1 58 - -
Lsi08g00454 421 SMART endo3end 204 382 IPR003265 GO:0006284
Lsi08g00454 421 Gene3D - 69 157 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00454 K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] - csv:101219118 657.136
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g236 . . . . . . . . . Cmo15g00669 . . . . Sed01g3102 . . Bhi04g01882 Tan11g1252 Cmetu03g0437 . Hepe02g2230 . Lcy10g1243 Cla08g00614 Cam08g1028 Cec08g0617 Cco08g0729 Clacu08g0738 . Cre08g0546 . . . . . . . Cme03g00519 . Blo18g00178 . Bda01g01453 Bpe02g01649 . Bma01g00806 . . . . . . . Car15g00609 . . . . . . . . . . . . . . . . Lsi08g00454 . Chy03g00766 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008522 3 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00454 Lsi_Chr08 FPKM 26.538843 27.183054 32.252556 32.390053 24.782991 26.223341 25.021507 27.692335 30.452009 26.525345