Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00455 ATGGGAAGTCAGCAGATGGAAGCACAAATGAGTACGGCCGCGACGCCGTCCTTTGGTGGTGGCAGCAACCGTATAGCGGCAGTTAACACGACGGAGAGAACGACAACTCCGACCAACGCCGTCAAGCCACAGAATCACCAAGAAGAACAAACCACCACCCATCAGAAGCCCGGATGGAAAAAGTTTCTATCACACGTTGGTCCTGGCTTCCTCGTCTCGTTGGCTTACCTTGATCCTGGCAACCTGGAAACGGACTTGCAGGCTGGAGCTAATCACGGATTCGAGCTTCTTTGGGTGGTGCTTATCGGATTAATATTTGCTCTCATAATCCAATCCCTCGCTGCAAATCTTGGGGTAAGCACAGTGATAGGAACAGCCTTTGCTCTGAATATTCTTTTCCATATTCCTGTTTGGGCTGGCGTTCTTCTCACCGGTTTAAGCACCCTTTTACTCCTTGGACTCCAAAGATATGGGGCGAGGAAGCTGGAATTGCTGATAGCAATATTGGTGTTCATAATGGCGGCGTGTTTCTTCGGGGAAATGAGTTACGTGAAGCCTCCGGCGACCGGCGTTTTAAAAGGAATGTTTGTTCCAAAGCTCAACGGCCAAGGAGCCACCGCCGACGCCATTGCTCTTCTTGGCGCCCTTGTTATGCCGCATAACCTCTTTCTTCATTCGGCTCTCGTGCTGTCAAGGAAAGTCCCAAATTCCGTCCGTGGTATCAACGATGCGTGTAGATACTTCCTAATAGAGAGTGGATTTGCATTGTTCATAGCATTTTTAATAAACGTGGCCGTCGTTTCAGTTTCCGGCACCGTTTGTACGGTCGGAAATGTCTCCGAAACCACCGCCGATCAATGCTCCGACATAACTCTCAATTCCGCCTCCTTCCTCCTCCAGAACGTTTTGGGAAAATCAAGCTCCATTATTTACGCCATTGCTTTGTTTGCCTCTGGACAAAGCTCCAGCATCACCGGCACTTATGCCGGTCAGTTCATCATGCAGGGATTTTTGGACCTGAAAATGAAAACATGGGCTCGAAACCTTATGACAAGGTCCATTGCAATAACGCCTAGTCTCATCGTATCCATCATCGGTGGACCTCAAGGAGCTGGCCGTCTCATCATTATTGCATCGATGATTCTTTCCTTCGAGCTTCCATTTGCTCTAATTCCACTCCTCAAATTCAGTAGCAGCTCCACCAAGATGGGCCCCCACAAGAATTCCATATACATAATTGTAATCTCGTGGATATTGGGCCTGGCAATCATCGGCATCAACATCTATTATCTCAGTACGGCCTTTGTGGGCTGGCTAATCCATAACAATTTACACAGAATTGCAAATGTGTTCATTGGGATCGTTGTTTTTCCATTAATGGCCATCTACGTTCTTGCCGTTATTTACCTTATGTTTCGAAAAGACAGGGTTGTCACTTACATTGAGCCCGAAAAGGATGACCCCATGGACCAAGCCCATTTGGAAAGTGGGCTTAATAATTCTTTTGGGCCGCGTGACGTCACTCCGGTGCCTTTCAGAGAGGACTTGGCCCATATCCCACTACCAGAGTAG 1572 48.09 MGSQQMEAQMSTAATPSFGGGSNRIAAVNTTERTTTPTNAVKPQNHQEEQTTTHQKPGWKKFLSHVGPGFLVSLAYLDPGNLETDLQAGANHGFELLWVVLIGLIFALIIQSLAANLGVSTVIGTAFALNILFHIPVWAGVLLTGLSTLLLLGLQRYGARKLELLIAILVFIMAACFFGEMSYVKPPATGVLKGMFVPKLNGQGATADAIALLGALVMPHNLFLHSALVLSRKVPNSVRGINDACRYFLIESGFALFIAFLINVAVVSVSGTVCTVGNVSETTADQCSDITLNSASFLLQNVLGKSSSIIYAIALFASGQSSSITGTYAGQFIMQGFLDLKMKTWARNLMTRSIAITPSLIVSIIGGPQGAGRLIIIASMILSFELPFALIPLLKFSSSSTKMGPHKNSIYIIVISWILGLAIIGINIYYLSTAFVGWLIHNNLHRIANVFIGIVVFPLMAIYVLAVIYLMFRKDRVVTYIEPEKDDPMDQAHLESGLNNSFGPRDVTPVPFREDLAHIPLPE 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12185700 12195406 - Lsi08G004550.1 Lsi08g00455 668381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00455 523 MobiDBLite consensus disorder prediction 1 57 - -
Lsi08g00455 523 PANTHER METAL TRANSPORTER NRAMP5 122 523 - -
Lsi08g00455 523 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 52 121 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lsi08g00455 523 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 122 523 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lsi08g00455 523 Hamap Divalent metal cation transporter MntH [mntH]. 52 435 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lsi08g00455 523 Pfam Natural resistance-associated macrophage protein 120 409 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lsi08g00455 523 PANTHER METAL TRANSPORTER NRAMP5 52 121 - -
Lsi08g00455 523 PRINTS Natural resistance-associated macrophage protein signature 134 153 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lsi08g00455 523 PRINTS Natural resistance-associated macrophage protein signature 379 398 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lsi08g00455 523 PRINTS Natural resistance-associated macrophage protein signature 159 180 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lsi08g00455 523 PRINTS Natural resistance-associated macrophage protein signature 209 232 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lsi08g00455 523 PRINTS Natural resistance-associated macrophage protein signature 319 338 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lsi08g00455 523 PRINTS Natural resistance-associated macrophage protein signature 106 132 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lsi08g00455 523 PRINTS Natural resistance-associated macrophage protein signature 347 364 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01334 Lsi-Chr1:11535681 Lsi08g00455 Lsi-Chr8:12185700 5.85E-08 dispersed
Lsi03g01265 Lsi-Chr3:23344450 Lsi08g00455 Lsi-Chr8:12185700 1.23E-11 dispersed
Lsi08g00455 Lsi-Chr8:12185700 Lsi10g00167 Lsi-Chr10:2689200 8.48E-84 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00455 K21398 - csv:101219356 882.863