Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi08g00456 | ATGTCTGCCCATAATCGCCGCCCTTCGTTTTCGTCGTCGACGTCGTCGTCGTTGGCCAAACGACAAGCGTCCTCGGCTTCGTCGTCAGACAATGTCGGAAAACTTATGGCAGTTCCGCCACACTTGGCGAAGAAGCGAGCGCCACTCGGTAACCTAACGAATTTTAAGAATGTGTCTCATAGTGCAGCCAAAAGCTCTGTTCCGCCTGCTATTATGGTGCCTTGTGCAACCAAAGCTGTGAAGGCCAGAAAGAGTTCCCCTGCTAGAACTCGCAGCACCAACTTGCCGGCGACTAATACAACGACATTGCTTGATGTCAAAACGGCGAATGCAATTGCTCCGAGCAATGTTACATCTTTCTCAAGAACTGATGCCACTGCTGTCTCTAGTTGTATGGATGTCTCTCCCTCTAAATCAGATGGAGTTTCAGTTTCCTTAGATGAAACTATGTCTACTTGTGATTCGTTTAAGAGTCCCGACGTCGAGTACTTGGACAATACTGATGTTCCAGCAGTTGATTCTGTTGAGAGGAAAACTAAAAGCAGTCTCTGCATTTCAGGCCCTGCACCAATTAGTAGTAGTCAGGCACCAATTAAAGATAGTATATGCAATAGAGATGTACTTACAGAAATGGAAACAGACGGCGACATCGTTGATGTTGATACCAATTTCATGGATCCCCAGCAATGTGCTACAATTGCTTGTGACATTTACAAGCACTTACGAGCATCTGAGGCAAAGAAAAGGCCTTCTACAGATTTCATGGAGAAAATTCAGAAGGATATAAATTCAAATATGCGTGCCATACTAATTGATTGGCTTGTGGAGGTAGCAGAAGAGTATAGGCTCGTGCCAGATACTCTATATTTGACAGTGAACTACATTGATCGATACCTATCTGGAAATTCGATGGATCGACAGCGATTACAGTTGCTTGGTGTTGCTTGCATGATGATTGCTTCAAAATATGAAGAGATCTGTGCACCTCAAGTGGAAGAATTTTGTTACATAACTGATAACACATATTTTAAAGACGAGGTATTGCAAATGGAATCTTCTGTCTTGAATTACTTGAAGTTCGAAATGACAGCTCCAACACCGAAATGTTTCTTAAGGCGATTTGTTCGTGCTGCTCAAGGCGCCACGGATGAGGTTTCATCAATGCAGTTGGAATGCTTGGCCAACTTCCTTGCTGAATTATCTCTTTTAGAATACAGTATGCTCTGCTTCGCGCCGTCGCTCATAGCTGCCTCAGCGATCTTCTTGGCGAAGTTCATACTTCTTCCAACTAAGAGACCATGGAACTCCACCTTGCAGCATTATACACATTATCAGCCATCCGATCTCGTCGACTGCGTTAAGGATTTACATCGCTTCTGCTGTAACACCCACAATTCTAGCTTACCAGCCATCAGAGAGAAATACAGCCAGCATAAGTACAAGCACGTGGCAAAGAAGTACTGCCCACCGACGATACCTCCGGAGTTCTTCCAGAATCAAACACAGTAA | 1509 | 44.4 | MSAHNRRPSFSSSTSSSLAKRQASSASSSDNVGKLMAVPPHLAKKRAPLGNLTNFKNVSHSAAKSSVPPAIMVPCATKAVKARKSSPARTRSTNLPATNTTTLLDVKTANAIAPSNVTSFSRTDATAVSSCMDVSPSKSDGVSVSLDETMSTCDSFKSPDVEYLDNTDVPAVDSVERKTKSSLCISGPAPISSSQAPIKDSICNRDVLTEMETDGDIVDVDTNFMDPQQCATIACDIYKHLRASEAKKRPSTDFMEKIQKDINSNMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNSMDRQRLQLLGVACMMIASKYEEICAPQVEEFCYITDNTYFKDEVLQMESSVLNYLKFEMTAPTPKCFLRRFVRAAQGATDEVSSMQLECLANFLAELSLLEYSMLCFAPSLIAASAIFLAKFILLPTKRPWNSTLQHYTHYQPSDLVDCVKDLHRFCCNTHNSSLPAIREKYSQHKYKHVAKKYCPPTIPPEFFQNQTQ | 502 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 12228253 | 12232132 | + | Lsi08G004560.1 | Lsi08g00456 | 668382 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi08g00456 | 502 | PANTHER | CYCLINS | 34 | 500 | IPR039361 | - | |
| Lsi08g00456 | 502 | Pfam | Cyclin, N-terminal domain | 236 | 362 | IPR006671 | - | |
| Lsi08g00456 | 502 | SMART | cyclin_7 | 369 | 458 | IPR013763 | - | |
| Lsi08g00456 | 502 | SMART | cyclin_7 | 272 | 356 | IPR013763 | - | |
| Lsi08g00456 | 502 | Gene3D | - | 250 | 363 | - | - | |
| Lsi08g00456 | 502 | SUPERFAMILY | Cyclin-like | 365 | 492 | IPR036915 | - | |
| Lsi08g00456 | 502 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
| Lsi08g00456 | 502 | PANTHER | CYCLIN-A1-1 | 34 | 500 | - | - | |
| Lsi08g00456 | 502 | CDD | CYCLIN | 363 | 457 | IPR013763 | - | |
| Lsi08g00456 | 502 | SMART | Cyclin_C_2 | 365 | 489 | IPR004367 | - | |
| Lsi08g00456 | 502 | CDD | CYCLIN | 266 | 355 | IPR013763 | - | |
| Lsi08g00456 | 502 | PIRSF | Cyclin_A_B_D_E | 4 | 495 | IPR039361 | - | |
| Lsi08g00456 | 502 | Pfam | Cyclin, C-terminal domain | 365 | 485 | IPR004367 | - | |
| Lsi08g00456 | 502 | ProSitePatterns | Cyclins signature. | 267 | 298 | IPR006671 | - | |
| Lsi08g00456 | 502 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
| Lsi08g00456 | 502 | Gene3D | - | 236 | 485 | - | - | |
| Lsi08g00456 | 502 | SUPERFAMILY | Cyclin-like | 226 | 362 | IPR036915 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi02g02759 | Lsi-Chr2:33845487 | Lsi08g00456 | Lsi-Chr8:12228253 | 1.12E-76 | dispersed | |
| Lsi03g00554 | Lsi-Chr3:6711122 | Lsi08g00456 | Lsi-Chr8:12228253 | 8.54E-80 | dispersed | |
| Lsi04g00993 | Lsi-Chr4:10849905 | Lsi08g00456 | Lsi-Chr8:12228253 | 3.19E-18 | dispersed | |
| Lsi04g01508 | Lsi-Chr4:22713118 | Lsi08g00456 | Lsi-Chr8:12228253 | 1.41E-38 | dispersed | |
| Lsi08g00456 | Lsi-Chr8:12228253 | Lsi08g01152 | Lsi-Chr8:20147136 | 6.71E-87 | dispersed | |
| Lsi08g00456 | Lsi-Chr8:12228253 | Lsi08g01505 | Lsi-Chr8:23165205 | 3.16E-99 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi08g00456 | K06627 | - | csv:101221569 | 912.524 |