Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00457 ATGCCTTTGCTTCTCCTCTGTTTCCTTCTCCAGTTTTCTTCTCTCCTTTTGCCGTCATCTGCGGCGGTTATAGGCGGCGATATCATCAGTGGCAACAGCATAGTCTTCACCACCCTCGGCAGGTCCTCCTACGCCTTCGATATCTTCACCCTACCGGTTGATGGCAACAGTTACCCTTCGACAGAGGATGAAACCCAAATCACCGACGGCCAATCCGTCAATTTCAATGGCTATTTCCCTTCCTCCTCATCATCTCCTTCGCTTATATCTCTTTTAACAAACCAATCACAGTCCTTTAGGCCAGATTTGGAACTCGTCTATGTCACAGAAAGAGACGGAATCTCCAAAATCTTCTACGATGCTATTTTCGGTGGCATCGGAATTAGTGTCAGACGGCGGTCGAAGCTCGAGATTCCTCATCGACTACAAATTCCCCTTTTGGATGATGAGCAGGAAAAGGAAGTTAGAGTTTCTCTCAAAGATCGGCCGAGTTTAAGTGGCGATTATTTGCTGTACGTGTCGACTCACGAGGATCCTGGTGAGCCCAGAACGAGTTGGGCAGCAGTGTACTCAAGGAGTTTGAAATCGGGTATAACTCGGCGATTAACACCTTATGGAATCGCCGATTTTAGCCCCTCTATTTCGCCGTCTGGAATTTGGACAGCTGTGGCTTCTTACGGCGAGAAGGGTTGGGCCGGCGAGGTTGAGGAACTAAGTACCGATTTATACATATTCCTAACTCGCGACGGAAGTCACCGAGTTAAGGTCGTTGAACATGGTGGCTGGCCGTGTTGGGCAGACGATTCAACACTATATTTTCACCGGAGAGGCGATGACCAGTGGCTGAGTATATACAAAGCAATTCTACCAAGTCATGGAGAAATTTCTCCTGATTCAGTGAAAATCGAACGACTCACTCCACCTGGGTTGCACGTGTTCACTCCAGCCACTTCACCGGCGAACAAAAACCTCATTGCCGTCGCAACAAGAAGACCTGATTCATCTTTTCGCCATATAGAGTTGTTCAACCTCGTCACTGGAGAGTTCAAGGAGCTAACAAAAGCGGTTTCACCTAATTCTCACCATCTCAATCCGTTCATCTCTGCCGACGGGACTCATATCGGTTACCACAAGTGCAGAGGCGACGACAATGGAAGAAAAAGCAACCCCCTATTCTTTGAGAACGTTCGTAGCCCTGTTTCTAATTTATCCTTATTTCGAATTGCCGGTTCTTTTCCCTCTTTTTCGCCTGTTGGTGACCGTGTAGCCTACGTGGACTTCCCAGGATTATACGTCATCAATCGGGACGGCTCAAACAAACGGGAGGTTTTCTCTGGCGCAGCATTCTCCACAGCGTGGGATCCAGTGCGAGAAGGTGTAGTGTACACCAGTGCCGGTCCCGATTTTGCAGCGGTGAGTACTATAGTCGATATCATTTCAGTCAACGTCGATGACGACGAGAAAAATTTCAAGAAGCTGACGACGAACGGTGTAAACAATGCCTTCCCATCGCCGTCCCCCGACGGGAAATGGATCGTTTTCCGGTCGGGTCAAACCGGGTACAAGAACCTGTACATAATGGACGCTGTCGACGGTGAGAGCAAAGGGCTTCGCCCGCTTACAGAGGGTCAGTGGACGGATACGATGTGCAGTTGGTCGCCGGACGGCGATTGGATCGCATTTTCATCGGACCGAGACAATCCTGGTTCCGGGAGCTTCGATTTGTTCTTGATCCACCCTAATGGAACCGGGTTGAGGAAGCTGTTTCAAAGCGGTTCAGCAGGTCGGGCGAACCACCCGAATTGGAGTCCAGACGGGAAGTTTCTAGTATTCACTACGGATAATGCAGGAATATCTGCGGAGCCAATATCCAACCCACATCACTATCAACCCTACGGTGAAATCTACATTATCAAATTGGATGGCTCTAATCTTCAGAGGCTGACTCATAACTCCTACGAGGATGGGACCCCCACGTGGAGCCCACGTTACATCAGCCCCATTAACGTGGAGGGCTTATACGACGTGGAGCCCTGTGGGTTTGAAGATTGTCACTGGCTTAACCAAAAGAAGAAGGCCGATAATGATATTAGGCCCATCTTAACTGGGCCTCGATGCAGCCATAATCCATCAACTCGCCCTCCAAACCCATAA 2154 49.35 MPLLLLCFLLQFSSLLLPSSAAVIGGDIISGNSIVFTTLGRSSYAFDIFTLPVDGNSYPSTEDETQITDGQSVNFNGYFPSSSSSPSLISLLTNQSQSFRPDLELVYVTERDGISKIFYDAIFGGIGISVRRRSKLEIPHRLQIPLLDDEQEKEVRVSLKDRPSLSGDYLLYVSTHEDPGEPRTSWAAVYSRSLKSGITRRLTPYGIADFSPSISPSGIWTAVASYGEKGWAGEVEELSTDLYIFLTRDGSHRVKVVEHGGWPCWADDSTLYFHRRGDDQWLSIYKAILPSHGEISPDSVKIERLTPPGLHVFTPATSPANKNLIAVATRRPDSSFRHIELFNLVTGEFKELTKAVSPNSHHLNPFISADGTHIGYHKCRGDDNGRKSNPLFFENVRSPVSNLSLFRIAGSFPSFSPVGDRVAYVDFPGLYVINRDGSNKREVFSGAAFSTAWDPVREGVVYTSAGPDFAAVSTIVDIISVNVDDDEKNFKKLTTNGVNNAFPSPSPDGKWIVFRSGQTGYKNLYIMDAVDGESKGLRPLTEGQWTDTMCSWSPDGDWIAFSSDRDNPGSGSFDLFLIHPNGTGLRKLFQSGSAGRANHPNWSPDGKFLVFTTDNAGISAEPISNPHHYQPYGEIYIIKLDGSNLQRLTHNSYEDGTPTWSPRYISPINVEGLYDVEPCGFEDCHWLNQKKKADNDIRPILTGPRCSHNPSTRPPNP 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12232240 12234393 - Lsi08G004570.1 Lsi08g00457 668383

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00457 717 Gene3D - 598 665 IPR011042 -
Lsi08g00457 717 SUPERFAMILY Tricorn protease N-terminal domain 411 662 - -
Lsi08g00457 717 PANTHER DPP6 N-TERMINAL DOMAIN-LIKE PROTEIN 29 683 - -
Lsi08g00457 717 Pfam WD40-like Beta Propeller Repeat 493 526 IPR011659 -
Lsi08g00457 717 Pfam WD40-like Beta Propeller Repeat 538 576 IPR011659 -
Lsi08g00457 717 Pfam WD40-like Beta Propeller Repeat 598 614 IPR011659 -
Lsi08g00457 717 MobiDBLite consensus disorder prediction 697 717 - -
Lsi08g00457 717 Gene3D - 392 570 IPR011042 -
Lsi08g00457 717 SUPERFAMILY DPP6 N-terminal domain-like 164 474 - -
Lsi08g00457 717 Gene3D - 129 391 IPR011042 -
Lsi08g00457 717 PANTHER DPP6 N-TERMINAL DOMAIN-LIKE PROTEIN 29 683 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00457 - - - bhj:120075362 1282.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02518 Lsi-Chr2:31619891 Lsi08g00457 Lsi-Chr8:12232240 1.05E-159 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g228 . . . . . . . . . Cmo15g00667 . . . . Sed03g0428 . . Bhi04g01877 Tan11g1249 Cmetu03g0593 . Hepe02g2220 . Lcy10g1246 Cla08g00617 Cam08g1031 Cec08g0620 Cco08g0732 Clacu08g0741 . Cre08g0549 . . Cone17ag0825 . . . . . . Blo18g00176 . Bda01g01455 Bpe02g01652 . Bma01g00803 . . . . . . . Car15g00607 . . . . . . . . . . . . . . . . Lsi08g00457 . Chy03g00761 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008521 3 1 1 3 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00457 Lsi_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0