Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00462 ATGGTGTTATGTTGCTTCAAGTGGCACTTGGACGCCATAGCCGTCGCCATGAATCGCTCTCTTCCGGCCTCTTTGATCCATTCTTATCTCTCTCCTTTTCGCCCTCTCTTTCCTTCCTCTAATAATGCCAGATTTCTCGGATTCCAATTGCAGACTTGGAAGCGAATCAGGAGGCGGCTTAAGTTTGCTGTCACTGCGGAGCTCTCGAAGTCTGCATCTCTCAATTCTGGCTCGGATTTTCAGTTACCATGGATGGGTCCTGTTCCTGGCGATATTGCAGAAGTTGAGGCATATTGTAGAATCTTTAGAACTGCTGAACGACTCCACTCCGTGCTGATGGATACTCTTTGCAATCCCTTCACCGGTGAATGTAGCGTTTCATATGATGTTTCACCAGGGGAAAATCCACTAATTGAGGATAAAATAGTTTCTGTTCTTGGATGTTTAGTATCTCTTTTAAACAAAGGAAGAGAGGATGTACTTTCTGGAAGATCAGCCGCCATGAATTCTTTCCGCGGTGCAAATTTAGATGCAATGGAGGACAATCTTCCTCCACTAGCTGCCTTTAGAAGTGAGATGAAAAGGTGTTGTGAAAGCTTGCATGTTGCTCTTGAAAACTTTTTGACTCCTGGTGATGACCGTAGTCTGGATGTATGGCGGAAACTTCAGAGGCTGAAGAATGTCTGTTATGATTCTGGTTTTACTAGGGGGGAGGATCATCCCTGCCATACATTGTTTGCCAATTGGACTCCTGTTTATCTACAGAATTTCAAGGACGAAACGTCAGCAAAAAATTCTGATGTAGCCTTCTGGAGTGGTGGTCAGGTAACTGAAGAAGGTCTGAAGTGGTTAATTGAGAGAGGATTTAAAACGATTGTTGATCTTAGGGCAGAGACAGTGAAGGACAAATTCTATAGTGCATCCTTGCATGATGCTATTGGTTCTGCAAAAGTTAAAGTGATCAAAATTCCCGTTGAAGTTAGGACTGCACCAACAGTGGATCAGGTTGAGAAGTTTGCATCGTTGGTTTCAGATGGCAGCAATGGGCTGATCTATCTTCACAGTAAGGAGGGTGTGTGGAGAACGTCAGCCATGATATCCAGATGGAGGCAATATGCAACTCGCAGTGGATCACAGATTGTCTCTAATCAGACAATTGTTCCGGGAGATATTCCCCTTAAAGACACCTCTTCCAAATTGGTCCATAATCAAAATGGAGCAAAAGAGTCGCTGGAAATTTCTATAATTGGAGAAACATTTCCATGTGACGAAGATAGTCAATCTTTGCTGCTTGAAAGTGCTCATCATAGCTCAATTAACAGAAAAAATTATGCAGAAACTGATGAAGTTAGTCAGAATGTAAATGGAGCTTACAATGGGCCTATTCCTACACAAGATATGACATCTTTAAGTGCAGTTGACAATGGTGGGATTGCAATTGACCCTCTGAAAGCTCAGATTCCTCCATGCAATATTTTTTCAAGAAAAGAAATGTCCAACTTTTTTAGGACCAAAAAGATTTCTCCACAAAACTACTTACACTGTCGAATGAAAACAAAAGAAAAATTTTCTACGGAGATACCTGCAAGCAGTGTTCAAAGGTTTAATGTTAGTGATAGTGACCTTAAATCTGGGATTGTTGAAGCAGAAAATTTTAATGGCAGCCCAAGTGTGAAAGATTTGTCCTTGAAGACCCAACATTTATCTACTACGAAGATGAATTATGTCAATGGTGATAGTCACGTATCTGCCAATCCTATTCTTAAAGGACTTGGAGTGGATGGAAGGAATCCTCTGACGACAGTTGCCTCTACTGCTGTTGAAGGTAAAGTTCCGTCTAAATCAGAAACAAATGGCTTAAAGAGCAATGGTCAAGCAACTTCAGTTTCTAGCAATGTTAACGTGGAATCTGTGGAGGGAAATATGTGTGCCTCTGCCACTGGTGTTGTAAGGGTGCAATCAAGAAGGAAGGCCGAGATGTTTTTAGTTCGAACAGATGGGTTTTCATGTGCCAGAGAAAAAGTGACTGAATCCTCTTTGGCTTTTACTCATCCTAGTACACAACAACAGATGCTTATGTGGAAATCCACTCCTAAGACTGTATTACTTCTGAAAAAGCTGGGTGAAGAGCTCATGGAAGAAGCTAAAGAGGTAGCCTTGTTCTTGTATCATCAAGAGAAGATGAATGTCCTTGTCGAACCTGACATACATGACATATTTGCAAGAATTCCAGGTTTTGGATTTGTCCAAACTTTTTATAGCCAAGACACCAGTGACCTGCATGAGAAAGTTGATTTTGTAGCATGCTTGGGTGGAGATGGGGTTATTCTCCATGCATCAAATTTATTTAGAGGTGCTGTTCCCCCAGTTGTTTCATTTAATCTCGGGTCTCTTGGATTTTTGACTTCCCACACTTTTGATAGTTACAGGCAGGACTTAAGACAAGTCGTTCATGGAAATGATTCACTCGATGGTGTCTATATAACTCTAAGAATGCGTCTTCAGTGTGAAATCTTTCGAAATGGAAAAGCAATTCCTGGGAAGTTATTTAATATTCTTAATGAGGTTGTTGTTGATCGAGGCTCCAATCCATACCTTTCCAAAATCGAATGTTATGAGCATGATCGGCTCATAACAAAGGTCCAGGGCGATGGGGTCATTGTGGCCACCCCTACTGGAAGCACTGCTTACTCTACCGCAGCAGGGGGTTCTATGTGGTTTCTGGCCATAAGTTGCATAATGGAAAATGTGGTTCTTGAATGTGATTATGGAGAACTAGCCGCTGAGGTGCATCCGAATGTTCCTTGCATGCTTTTTACTCCAATCTGTCCCCATTCTCTCTCATTTAGACCAGTTATACTTCCGGACTCTGCACGACTCGAGTTAAAGATTCCCGAGGACGCACGGAGTAACGCTTGGGTTTCTTTCGATGGGAAGAGAAGGCAACAACTCTCAAGAGGAGATTCTGTTAGGATATCCATGAGCAGACATCCACTCCCAACTGTAAACAAGTCTGATCAAACTGTAGTAGCGGCCAAGCAGGTTGGTAAGGAGGACCGGCTTCGAACCGTCGACGCGTCGTCAGAGAAGAAGAACCGAAAGCTTCTGCAATTGAGCTGCTGCCCGAGGCCATGGCGGGGTCTGGGAGTTCCATGCTTTACTCATTTCTTCTGTTCACTGTCATTCTTTCGCTTCAAGAGATTCATCGTAGCAGAAGCAGTTGCATTGATTGCTGCAAGCACTGTTCATAGAGTTTGCATCACAACATGTTTCTTGTTCTCCGCTGGACTGTTGTATGAATTGAACAAGCTTTCGGGTGTGGCACTTTCTAAATCTGAATCTAGAGCTAAAAGGCACTGA 3360 42.74 MVLCCFKWHLDAIAVAMNRSLPASLIHSYLSPFRPLFPSSNNARFLGFQLQTWKRIRRRLKFAVTAELSKSASLNSGSDFQLPWMGPVPGDIAEVEAYCRIFRTAERLHSVLMDTLCNPFTGECSVSYDVSPGENPLIEDKIVSVLGCLVSLLNKGREDVLSGRSAAMNSFRGANLDAMEDNLPPLAAFRSEMKRCCESLHVALENFLTPGDDRSLDVWRKLQRLKNVCYDSGFTRGEDHPCHTLFANWTPVYLQNFKDETSAKNSDVAFWSGGQVTEEGLKWLIERGFKTIVDLRAETVKDKFYSASLHDAIGSAKVKVIKIPVEVRTAPTVDQVEKFASLVSDGSNGLIYLHSKEGVWRTSAMISRWRQYATRSGSQIVSNQTIVPGDIPLKDTSSKLVHNQNGAKESLEISIIGETFPCDEDSQSLLLESAHHSSINRKNYAETDEVSQNVNGAYNGPIPTQDMTSLSAVDNGGIAIDPLKAQIPPCNIFSRKEMSNFFRTKKISPQNYLHCRMKTKEKFSTEIPASSVQRFNVSDSDLKSGIVEAENFNGSPSVKDLSLKTQHLSTTKMNYVNGDSHVSANPILKGLGVDGRNPLTTVASTAVEGKVPSKSETNGLKSNGQATSVSSNVNVESVEGNMCASATGVVRVQSRRKAEMFLVRTDGFSCAREKVTESSLAFTHPSTQQQMLMWKSTPKTVLLLKKLGEELMEEAKEVALFLYHQEKMNVLVEPDIHDIFARIPGFGFVQTFYSQDTSDLHEKVDFVACLGGDGVILHASNLFRGAVPPVVSFNLGSLGFLTSHTFDSYRQDLRQVVHGNDSLDGVYITLRMRLQCEIFRNGKAIPGKLFNILNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMWFLAISCIMENVVLECDYGELAAEVHPNVPCMLFTPICPHSLSFRPVILPDSARLELKIPEDARSNAWVSFDGKRRQQLSRGDSVRISMSRHPLPTVNKSDQTVVAAKQVGKEDRLRTVDASSEKKNRKLLQLSCCPRPWRGLGVPCFTHFFCSLSFFRFKRFIVAEAVALIAASTVHRVCITTCFLFSAGLLYELNKLSGVALSKSESRAKRH 1119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12312432 12324114 - Lsi08G004620.1 Lsi08g00462 668388

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00462 1119 Gene3D Protein tyrosine phosphatase superfamily 253 390 IPR029021 -
Lsi08g00462 1119 PANTHER NAD/NADH KINASE FAMILY PROTEIN 929 1008 - -
Lsi08g00462 1119 PANTHER NAD/NADH KINASE FAMILY PROTEIN 77 914 - -
Lsi08g00462 1119 PANTHER NAD KINASE 929 1008 - -
Lsi08g00462 1119 SUPERFAMILY NAD kinase/diacylglycerol kinase-like 930 1006 IPR016064 -
Lsi08g00462 1119 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 270 376 IPR029021 -
Lsi08g00462 1119 Gene3D - 695 848 IPR017438 -
Lsi08g00462 1119 Hamap NAD kinase [nadK]. 699 1027 IPR002504 GO:0003951|GO:0006741
Lsi08g00462 1119 Gene3D - 927 1019 IPR017437 GO:0003951|GO:0019674
Lsi08g00462 1119 Pfam ATP-NAD kinase C-terminal domain 929 1003 - -
Lsi08g00462 1119 Pfam ATP-NAD kinase C-terminal domain 853 905 - -
Lsi08g00462 1119 Gene3D - 849 920 IPR017437 GO:0003951|GO:0019674
Lsi08g00462 1119 Pfam ATP-NAD kinase N-terminal domain 754 819 IPR002504 GO:0003951|GO:0006741
Lsi08g00462 1119 Pfam Keratinocyte-associated protein 2 1070 1115 IPR018614 -
Lsi08g00462 1119 PANTHER NAD KINASE 77 914 - -
Lsi08g00462 1119 SUPERFAMILY NAD kinase/diacylglycerol kinase-like 702 913 IPR016064 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00462 K00858 ppnK, NADK; NAD+ kinase [EC:2.7.1.23] - csv:101204002 1726.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00536 Lsi-Chr6:6632654 Lsi08g00462 Lsi-Chr8:12312432 1.55E-60 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g216 . . . . . . . . Cmo04g02505 Cmo15g00662 . . . . Sed01g3084 . . Bhi04g01869 Tan11g1240 Cmetu03g0963 . Hepe02g2213 . Lcy10g1253 Cla08g00622 Cam08g1036 Cec08g0626 Cco08g0737 Clacu08g0746 . Cre08g0554 Cone4ag1431 Cone7ag1504 . . . . . Cme03g00495 Blo17g00169 . . Bda13g01468 . Bpe14g00397 . Bma02g00204 . . . . . Car04g02311 Car15g00599 Cpe01g02074 . . . . . . . . . . . . . . . Lsi08g00462 . Chy03g00755 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007207 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00462 Lsi_Chr08 FPKM 17.698736 19.864815 2.280718 2.1694 14.046019 12.826895 14.503645 0.518493 0.629705 0.489941