Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00466 ATGGCATGTCTTGGCGTAGGTATGATCTTTGGCCAAAAGCTTTCAAAGTTCAGTTTTGACGAGTTAAGCATGAACCTGCAGGTACATCAAATTGCCCGAAGTTTTCGGGACAGATGGTTCCCCAGACATACTAGAAAATTTGGTTACTCTGAGAGGGAGGATGGAAGATTGGAAGGTTACAGGGGTTCAAACTGCGGTAGGTTTACAGCATCACACAGTTATCGGCATGATCAGGATTCCAGACCGACGGATGCAATTGATTGTGTCAAGCAGTCAATGCCATCTTTGCCAGATGCTCATCCTGCGGAGGTCTGTTCTGTGGCTTCCACAGCTGGTCACTCATTGAATGGACAAAAAGTCCGTAAGCGTAAGAGCCGATGGGATCAGCCTGCAGACACAAGCCTAGATCTGAGATCCAAGGAGCAGAAGCTTGAATCAACATCAGTGCAGCAATTGAATTCCAGCCAATTAAATGATGTTGGAGTGGCGTCAATGTTGATAGACAAAGTAAACAATGATGATAAGGACCCCTCCCTCTCTGATTCTGTTGGAGATCGTTGTCGGCAAGATGAAGATATTAGGGCAGACAGTGCAGTGCAGAACATCCTTGAAGATATTCCTCCAGGATTTTCATCTCCCTTTCATCCCCCCATGGCTTCCTCGAGCACTTTTTCAACAGTTTTAGATCCTCCTCGTCAGAATATTGGCAATTTGAGTTGTGCTTTTTCCACGGTTGGGCACCCACAGGAAAGATTCATTTCTCGCTTGCCTGTGTCCTATGGAATTCCATTTTCTATCATTGAGCAATGTGGAACATCCCGTGCAGAGAATCTGGAGTGTTGGGATGTTGCTCCAGGAGTGCCTTTTCATCCTTTTCCACCCCTGCCGCCTTATCCCCGAGGTAAGAGAGGCCCGCCTACATCTGCCTGTGGTACTGTAGTTGGACAGTCCTTTCAAGAAGGGCAGGTCAACAGCCATGATTCTCGAACTTCTTTCTCAGAAGAAAGCCCTCCTAGTACAAGTACTAATTACCAACCGGATGTGTGCACTCCATCAAACAACCAACAGATACCGAAACGGGCAAAAGAATCATCGTACGACTTGGGAAGAAGGTACTTTAGGCAGCAAAAGTGGCGTAATTCAAAGTATGGCCCCCCTTGGTTACAGAGAAGAAATCAGTGGGGATGCCAGGGGAACTTCAGGGAAGGGGTGAGCACTATAGGTGATGACAATATACCCAATGAAGAAATAAGTCCATATTACTCGGATGAAGCAAGCGGTAAAGTGGATAAAGCTAATGATGATTTTTATCAGCATTTGCAGAACCAAAATCTGCATTGA 1341 46.01 MACLGVGMIFGQKLSKFSFDELSMNLQVHQIARSFRDRWFPRHTRKFGYSEREDGRLEGYRGSNCGRFTASHSYRHDQDSRPTDAIDCVKQSMPSLPDAHPAEVCSVASTAGHSLNGQKVRKRKSRWDQPADTSLDLRSKEQKLESTSVQQLNSSQLNDVGVASMLIDKVNNDDKDPSLSDSVGDRCRQDEDIRADSAVQNILEDIPPGFSSPFHPPMASSSTFSTVLDPPRQNIGNLSCAFSTVGHPQERFISRLPVSYGIPFSIIEQCGTSRAENLECWDVAPGVPFHPFPPLPPYPRGKRGPPTSACGTVVGQSFQEGQVNSHDSRTSFSEESPPSTSTNYQPDVCTPSNNQQIPKRAKESSYDLGRRYFRQQKWRNSKYGPPWLQRRNQWGCQGNFREGVSTIGDDNIPNEEISPYYSDEASGKVDKANDDFYQHLQNQNLH 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12382357 12383697 + Lsi08G004660.1 Lsi08g00466 668392

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00466 446 MobiDBLite consensus disorder prediction 320 356 - -
Lsi08g00466 446 MobiDBLite consensus disorder prediction 114 134 - -
Lsi08g00466 446 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHH2-LIKE 27 390 - -
Lsi08g00466 446 PANTHER SET DOMAIN PROTEINS 27 390 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00466 - - - bhj:120075567 755.362
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g211 Blo01g01308 . Bda01g00676 . Bpe02g00629 . . Bma01g02090 Cmo04g02507 Cmo15g00659 . . . . . . . Bhi04g01862 Tan11g1236 . . Hepe02g2211 . Lcy10g1258 Cla08g00625 Cam08g1044 Cec08g0630 Cco08g0742 Clacu08g0751 . Cre08g0560 . . Cone17ag0818 Cone20ag0423 . . . Cme03g00490 . . . . . . . . . . . . . Car04g02314 Car15g00596 Cpe01g02076 . . . . . . . . . . . . . . . Lsi08g00466 . Chy03g00750 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003381 1 5 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 2 1 6 3 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00466 Lsi_Chr08 FPKM 2.041676 2.15386 4.501915 3.79373 5.857316 5.882644 5.968348 4.71607 4.59071 4.439334