Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00467 ATGAAATTCCTCCAAAATGGACTCGCCGGCGAGTCACTCCAAGTTGATTCCGGCCGAACTGTGCTGGTGGGCGTGAAATTGGACTCCCATAGTAGAGAGTTGCTAACTTGGGCTTTGGTTAAGGTTGCTCAGCCTGGTGACCTTGTGATCGCTCTTCATGTTCTTGGCAACGATGAAATTGTGAATCAAGATGGGAAATCTTCGCTTCTTTCTCTTGTAAAAGCGTTCGATTCTGTGCTGGCTGTATATGAAGGTTTCTGCAACTTGAAGCAGGTGGATCTGAAGCTCAAAATCTGCAGAGGAGAATCGGCTAGAAAAATTTTAGTTCGTGAAGCAAAATCATATCGCGCTACTAACGTGATTGTTGGGACTGCTCGTAAGCACCACAAAATCCGTTCATCGACTTCCGTTGCCAAGTACTGCGCCAAAAAGTTACCCAAAGATTTTTGGGTTCTCGCTGTTCATAATGGCAAAGTGATTTTCGAACGAGAGGGCTGTCCAGTGGCCACAGGGGACTGCCAAGGTTTGTGTTATTTTCATAAAAATATGGGAAATCAGGAACAGCGCCATAGCAATTTACTTGCTGCAGTTTACGGATCGTCGGATAGCCCTCCCAAAGTTCATAGCGGTGAGAGTTTTGGTTCTCTGTTGGCGAGGGACAAATGTAATCTGGGAATTGGCAAGAATTCTGATCAGGGATTAGCAAAAGCCATATTAGTTAGTACTAATAAACAGAACTGCTCAATTTGTGGATCGGAGTCGAATTCTGTGGAACAATCTGCAGAGATATCTTCTGGTGATGGAGAAAAACATGATGAATCTTTGGCTATAGTTCCAGTACAGAAAGTCGAGATAGTTTCGAGCTCGATTACTAAGTTGATCAAGCAATTGCCTGAAGTGAAACCAGGCTGGCCTCTGCTTCGACATGTCGATCCGTCGTGTCAATCGGGTCGACAAGCTTCTTCTGACAGATCGTTGGCGAAGCAAATCTCTGTAGTTCAGTGGGCAATGAGGTTACCTAGCCGGTCTCCTTCTTATCCTGCTGCTTTGGATTACAAATCTAATACCTCTGATCGATCTTTGAGTCTTGATGGGGAAAATGGGGCTATGGTTCTGGTGGGTTCTGAACCAGTGCTTTCCCCTGACTTCGATTCTGAAACCTTACCGAAAGAACTGGAAGGTTTCCATGAGAAATACTCATCAACTTGTAGATTATTTAATTATCATGAACTCCTTACAGCAACGTCGAATTTCTTACCCGAAAATTTGATTGGGAAAGGAGGAAGCAGCCAGGTTTTTAGAGGTTGCCTTCCTGATGGCAAGGAGGTTGCTGTGAAGATCTTGAAACCATCAGAAGATGTTCTGAAGGAGTTCGTTTTGGAAATTGAGATCATTACCTCCTTAAGTCACAAGAATATTATTTCCCTTTTGGGATTTTGCTTTGAAAACAGCAAGTTCTTGCTGGTTTATGATTTTCTATCAAGAGGATGTCTTGAAGAAATTCTTCATGGGAATAGAAAGAATCCAAATACATTTGGTTGGTGTGAAAGATATAAGGTAGCTGTTGGTGTAGCTGAGGCGTTGGATTATCTCCACCGAGATGCTCAGCATGTGATCCATAGGGATGTTAAATCGTCTAACATTTTGTTATCTGACGATTTCGAACCGCAGTTATCAGATTTTGGGCTGGCTAAACGAGCATCAAACTCGTCGCACGTAACCTGTACAGATGTTGCAGGAACCTTCGGCTACCTGGCTCCCGAGTATTTCATGTATGGCAAGGTAAATGACAAGATTGATGTCTATGCTTATGGCGTGGTACTCCTTGAACTTCTTTCCGGGAGAAAACCGATAAGCACCGAGTATCCGAAAGGACAAGAAAGCCTGGTCATGTGGGCAAGGCCAATTTTAATTGATGGGAAGGTGTCTCGATTACTCGATCCTAGCTTGGGAGGTAACTACAACCAGGATGAGATGGAACGTGTGGTTCTTGCAGTGAGCCTTTGTATCAGACGTGCCCCACGAGCTAGACCTCCAATAAGCCTTGTTCTGAAACTTCTCCAAGGTGATGTAGATGTAACCAAGTGGGCAAGGCAACAGATCAATGCTCTAGGGGATTCCAACACTCTAGATGAGGAAGTATGTCCTCGATCCGATATCCAATCGCATCTCAACCTTGCACTGCTCGACGTCGATGACGACTCGCTCTCCCTGAGCAGCATCGAACAGAGTATCTCATTGGAGGATTATTTGCAAGGCAGATGGAGCCGTTCATCGAGTTTCGACTAA 2289 44.52 MKFLQNGLAGESLQVDSGRTVLVGVKLDSHSRELLTWALVKVAQPGDLVIALHVLGNDEIVNQDGKSSLLSLVKAFDSVLAVYEGFCNLKQVDLKLKICRGESARKILVREAKSYRATNVIVGTARKHHKIRSSTSVAKYCAKKLPKDFWVLAVHNGKVIFEREGCPVATGDCQGLCYFHKNMGNQEQRHSNLLAAVYGSSDSPPKVHSGESFGSLLARDKCNLGIGKNSDQGLAKAILVSTNKQNCSICGSESNSVEQSAEISSGDGEKHDESLAIVPVQKVEIVSSSITKLIKQLPEVKPGWPLLRHVDPSCQSGRQASSDRSLAKQISVVQWAMRLPSRSPSYPAALDYKSNTSDRSLSLDGENGAMVLVGSEPVLSPDFDSETLPKELEGFHEKYSSTCRLFNYHELLTATSNFLPENLIGKGGSSQVFRGCLPDGKEVAVKILKPSEDVLKEFVLEIEIITSLSHKNIISLLGFCFENSKFLLVYDFLSRGCLEEILHGNRKNPNTFGWCERYKVAVGVAEALDYLHRDAQHVIHRDVKSSNILLSDDFEPQLSDFGLAKRASNSSHVTCTDVAGTFGYLAPEYFMYGKVNDKIDVYAYGVVLLELLSGRKPISTEYPKGQESLVMWARPILIDGKVSRLLDPSLGGNYNQDEMERVVLAVSLCIRRAPRARPPISLVLKLLQGDVDVTKWARQQINALGDSNTLDEEVCPRSDIQSHLNLALLDVDDDSLSLSSIEQSISLEDYLQGRWSRSSSFD 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12398614 12402738 + Lsi08G004670.1 Lsi08g00467 668393

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00467 762 Gene3D HUPs 18 155 IPR014729 -
Lsi08g00467 762 CDD USP_Like 20 154 - -
Lsi08g00467 762 ProSitePatterns Protein kinases ATP-binding region signature. 424 446 IPR017441 GO:0005524
Lsi08g00467 762 Pfam Protein kinase domain 422 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00467 762 SUPERFAMILY Protein kinase-like (PK-like) 399 693 IPR011009 -
Lsi08g00467 762 Gene3D Phosphorylase Kinase; domain 1 386 492 - -
Lsi08g00467 762 ProSiteProfiles Protein kinase domain profile. 418 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00467 762 SMART serkin_6 418 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00467 762 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 19 151 - -
Lsi08g00467 762 PANTHER - 13 745 - -
Lsi08g00467 762 Pfam Universal stress protein family 19 151 IPR006016 -
Lsi08g00467 762 ProSitePatterns Serine/Threonine protein kinases active-site signature. 538 550 IPR008271 GO:0004672|GO:0006468
Lsi08g00467 762 Gene3D Transferase(Phosphotransferase) domain 1 493 704 - -
Lsi08g00467 762 PANTHER OS08G0249100 PROTEIN 13 745 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00467 - - - csv:101203034 1331.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00467 Lsi-Chr8:12398614 Lsi10g00758 Lsi-Chr10:10394485 0 dispersed
Lsi08g00467 Lsi-Chr8:12398614 Lsi11g00260 Lsi-Chr11:2621815 6.98E-77 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g209 . . . . . . . . Cmo04g02508 Cmo15g00658 . . . . . . . Bhi04g01860 . . . . . Lcy10g1259 Cla08g00627 . . . . . . . . Cone17ag0817 Cone20ag0422 . Csa04g01957 . Cme03g00489 Blo17g00166 Blo18g00172 . Bda13g01465 Bpe02g01658 . Bma01g00797 . . . . . . Car04g02316 Car15g00595 Cpe01g02077 . . . . . . . . . . . . . . . Lsi08g00467 . Chy03g00749 .
Vvi18g1149 . . . . . . . . Cmo04g02508 Cmo15g00658 . . . . . . Cpe13g00644 Bhi04g01860 . . . . . Lcy10g1259 Cla08g00627 . . . . . . . . Cone17ag0817 Cone20ag0422 . . . . . . . . . . . . . . . . . Car04g02316 . Cpe01g02077 . . . . . . . . . . . . . . . Lsi08g00467 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004130 2 1 2 2 1 1 2 1 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 1 1 1 1 0 3 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83817 PF00069 Pkinase 1.50E-44 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00467 Lsi_Chr08 FPKM 26.796297 30.572287 0.222353 0.319355 1.078554 0.958152 1.182477 0.088158 0.0 0.221499