Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00468 ATGGCTTCCTCTGTCGATTCCACTGCACTCAAGCTTTCTAAGCTTGGCATCAATGAAGATTTCGCCTCCTCTGTTCCTAATTTACGGAAGAATCTCCATCTTCTATCGCCTGAACAGGTTGAATTGGTGAAGATATTGTTGGAAATGGGGCAGAGTCATCTTTTTGAGCATTGGGCCGAGCCTGGCGTTGACGATAATGAAAAGCAGGCTTTCGTCGACCAGATTGCTCGGCTTAATTCTAGCTATCCTGGGGGGTTGGCCTCCTATATTAAGACTGCCAGAGGACTCTTAGCAGATTCCAAAGCAGGAAAGAACCCATTCGATGGCTTCACTCCCTCTGTTCCAACTGGTGAAGTTTTGACTTTTGGTGATGATAGCTTTGTCAACTTTGAGGACAGAGGTGTAAGGGAAGCCCGAAAGGCTGCATTTGTTCTTGTTGCTGGTGGGCTTGGGGAGCGGCTAGGATTTAATGGAATTAAGGTGGCTCTTCCAGCAGAAACTACTACAGGAACATGTTTCTTACAGTGTTACTTTGAATACGTTTTGGCTCTTCAAGAAGCTAGCAATAGACTTGCAGGTGAATTTCAAACAGAGATTCCTTTTGTTATAATGACATCAGATGATACTCATTCACGTACAGTAGAGCTGTTGGAATCAAATTCTTATTTTGGAATGAAACCCTCACAAGAAAAAGTTGCTTGTTTGGATGATAATGAGGCCAGGCTTGCCGTTGATCCACATAACAAATATAGGATTCAGGCAATTCCAGCTTCTTTGGGTGTTAGTGCTACAAGAGAGTACCATGTTAATTCTCTTGCTGTTCCACGCAAAGCAAAAGAAGCCATTGGTGGAATTACTCGTCTTACTCATGCTGATGGGAGGTCTATGGTTATCAATGTGGAATATAATCAGCTTGACCCACTGCTTAGAGCAACTGGATTTCCTGATGGTGATGTCAACAATGAGACCGGCTTCTCTCCTTTTCCAGGAAATATAAACCAACTAATTTTAGAACTTGGTCCCTATATTGAGGAGCTGAGCAAAACAGGAGGTGCTATAAAGGAGTTTGTCAATCCCAAATATAAAGATGCTAGCAAGACTTCTTTCAAGTCTTCAACCCGATTGGAATGCATGATGCAAGATTATCCAAAGACATTACCTCCATCAGCTAGGGTTGGATTTACGGTGATGGATACCTGGCTTGCTTATGCACCAGTGAAGAATAACCCCGAAGATGCCGCTAAGGTACCGAAGGGAAACCCTTATCACAGTGCTACTTCGGGGGAAATGGCCATCTACCGTGCAAATAGCCTTGTTCTCAGAAAGGCAGGACTTCAAGTGGCCGACCCAGTTGAACAGGTGTTCAATGGCCAAGAGGTTGAAGTCTGGCCTCGCATCACATGGAAACCGAAATGGGGTTTGACCTTTTCAGAGATAAAGAGCAAAGTTAGTGGAAATTGCTCCATTTCTCAGCGTTCTACCATGGTTATCAAGGGAAAAAACGTCTATCTTAAAGATCTCTCCTTGGATGGAACTCTTATTGTGAATGCAGCTGAAGATGCTGAGGTAAAAGTGGAGGGTTCAGTGCAGAACAAGGGTTGGACTCTCGAACCCGTTGATTATAAAGACACTTCAGTGCCAGAGGAAATAAGGATTAGAGGCTTCAGAATCAACAAAATCGAGCAGGAAGAAAGAAACTGA 1701 43.74 MASSVDSTALKLSKLGINEDFASSVPNLRKNLHLLSPEQVELVKILLEMGQSHLFEHWAEPGVDDNEKQAFVDQIARLNSSYPGGLASYIKTARGLLADSKAGKNPFDGFTPSVPTGEVLTFGDDSFVNFEDRGVREARKAAFVLVAGGLGERLGFNGIKVALPAETTTGTCFLQCYFEYVLALQEASNRLAGEFQTEIPFVIMTSDDTHSRTVELLESNSYFGMKPSQEKVACLDDNEARLAVDPHNKYRIQAIPASLGVSATREYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNNETGFSPFPGNINQLILELGPYIEELSKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSARVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYRANSLVLRKAGLQVADPVEQVFNGQEVEVWPRITWKPKWGLTFSEIKSKVSGNCSISQRSTMVIKGKNVYLKDLSLDGTLIVNAAEDAEVKVEGSVQNKGWTLEPVDYKDTSVPEEIRIRGFRINKIEQEERN 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12408640 12420515 + Lsi08G004680.1 Lsi08g00468 668394

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00468 566 Gene3D - 445 565 - -
Lsi08g00468 566 PANTHER UDP- GLUCOSE PYROPHOSPHORYLASE 253 553 IPR039741 -
Lsi08g00468 566 PANTHER UDP-SUGAR PYROPHOSPHORYLASE 26 253 - -
Lsi08g00468 566 PANTHER UDP-SUGAR PYROPHOSPHORYLASE 253 553 - -
Lsi08g00468 566 PANTHER UDP- GLUCOSE PYROPHOSPHORYLASE 26 253 IPR039741 -
Lsi08g00468 566 Pfam UTP--glucose-1-phosphate uridylyltransferase 136 223 IPR002618 GO:0070569
Lsi08g00468 566 SUPERFAMILY Nucleotide-diphospho-sugar transferases 40 519 IPR029044 -
Lsi08g00468 566 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 253 444 IPR029044 -
Lsi08g00468 566 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 36 252 IPR029044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00468 K12447 USP; UDP-sugar pyrophosphorylase [EC:2.7.7.64] - csv:101202798 1028.47
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g205 Blo01g01310 Blo12g01117 Bda01g00679 Bda03g00024 Bpe02g00626 . Bma04g00020 Bma01g02093 Cmo04g02509 . . . . . Sed01g3096 . . Bhi04g01859 Tan11g1232 Cmetu03g0430 . Hepe02g2207 . Lcy10g1261 Cla08g00628 Cam08g1046 Cec08g0632 Cco08g0744 Clacu08g0753 . Cre08g0562 . . Cone17ag0816 Cone20ag0421 . . . Cme03g00485 . . . . . . . . . . . . . Car04g02317 . Cpe01g02078 . . . . . . . . . . . . . . . Lsi08g00468 . Chy03g00748 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009046 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00468 Lsi_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0