Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00480 ATGGGCCGTTCAAGGGAGACGCTTATTCAACTCACCGCAGTCGTCTTATCAAGCACTTTTTTTGTGGTGGCGACAATGGCAATAACTAATCCTCAAGCCTTACCCGGGTGCGTTGAACGGTGCGGCGACATGCCGATTCCATATCCGTTCGGGACGAAGGAAGGATGTTATCTGAATGAAACATTCTTCATTCAGTGTAACACAAGTCATGATTACGATTCTCCAAAGGCATTTCTAAATGGCAGCAACATTAATGTTACAAATATATCCATCTCGGGGGAGATCCAAATCTTGAACTTCATAGTCCAAGATTGCTACCCACCAAAAATTGGTCCCGATGTTTTTTCTAGTGTCTCTCTCAATTTACCTGGGTACACTATTTCAATTACCAAAAACAAGTTCATCTCTATCAGTTGCGATACTCTCGGTTTTATTTCCGGCCAAAGCGAAGAAAACGATACCTTTACAACTGCATGTGTGGCGTTGTGTGATGATATTAGCTCAGTAAAAGATGGGGCTTGCTCTGGCAATGGGTGTTGTCAATTGGAGATTCCCAGTAGTCTTAATTATTTTGAGATTCAAGTCAGCAGCTTAAACAATCACATTAATGTGTCGAGTTTCAATCCTTGTGGGTATGCTTTTGTAACTGAACAACACAACTTCAACTTCTCCTCCAACTATATTACCAATTTTCCTCAAAACAAAATTTCGACAGTGCTTGATTGGGCCATTAGTAACACTACTTGTGTAACGGCTGACAACAAAACTAATTGTATATGTGGCTCAAATAGCACCAAGGTTGACTTCGTCCCTGATGGATCTAAATATCGTTGCCAGTGCTTGGAAGGCTATGAGGGGAATCCATATCTCCCTCAAGGTTGTCAAGATATAGATGAGTGCAAGGATAAAAGTCTTAATGACTGCAGGTATGAGTGTGTTAATACAATAGGAAACTATACCTGCAATTGTCCCAAGAACTTTAAAGGAGATGGAAGACGTGGAGGAGAAGGTTGCACCCGAAACACCAAGTCTTTTCTTCAAATCATTATCGGAGTTACCTTGGGATTCTCAGTCTTAGTAATTGGGAGTACATTCTTATACTTGAGTTACAAAAAGTGGAGAATTTTCACTAAAGAAGAGCTGGACAAGGCAACAAACAAGTACGACGAAAGTGCGGTGGTCGGAAAAGGTGGCTTCGGCACTGTTTACAAAAGAGTCTTAGACGACGGTTCGGTAGTCGCAATTAAGAAATCAAAATTAGTAGACCAATCTCAAACTTCTCAATTCATTAACGAAGTCATTGTTTTGTCCCAAATCAACCACCGTAATGTGGTGAAACTCTTAGGATGTTGTCTAGAAACACAAGTTCCATTGTTGGTGTATGAGTTCATCACCAACGGCACACTTTACGACCACATCCATGATAAAGCCAATTATGATTCTCTTTCATGGGAAGTTCGTTTGAGAATAGCTTCAGAAACTACTGGTGTGATTTCATATTTGCATTCTTCAGCTTCCACTCCAATTATCCATAGAGATATCAAGACAACCAATATACTTCTAGATCATAATTATACTGCAAAGGTGTCTGATTTCGGTGCTTCCAAGTTGGTTCCAATGGATCAAACTCAGTTATCCACGTTGGGGCAAGGGACTCTTGGATATTTAGACCCTGAATATTTGTTAACAAGTGAGTTGACGGAGAAGAGTGATGTATATAGCTTTGGAATAGTACTTCTAGAGCTTATAACAGGGAAGAAGGCAGTGAGTTTCGTGGGGCCAGAAGTGGAGAGGAACCTAGCCATGTACATGCTGTGTGCAATGAAGGAAGATCGTTTGGTAGAAGTTGTGGAGAAGGGAATGGCGACGGAAGCGAACTTTGAGCAGATAAAAGAAGCGGCGAAGTTAGCAACAAAGTGTTTGAGAATAAGGGGGGAAGAACGGCCTAGCATGAAGGAGGTGACCATGGAGTTGGAGGGTCTGAGATCAGTGTCGGTTGAGGCTAATAAGAAATTAGGAAGCAGAGGAGAGACGATGGTGGGTTATTTGGTGCAATCCGATGGAAGTTCAGAATCAACATCCAACCAGTTTGTTGCAAGTGGGAGCACAAATGTTGTGGATGATAGTATGAAGGTTGAGATTTTGCCACTGATACATCAAGGAAGATGA 2169 41.59 MGRSRETLIQLTAVVLSSTFFVVATMAITNPQALPGCVERCGDMPIPYPFGTKEGCYLNETFFIQCNTSHDYDSPKAFLNGSNINVTNISISGEIQILNFIVQDCYPPKIGPDVFSSVSLNLPGYTISITKNKFISISCDTLGFISGQSEENDTFTTACVALCDDISSVKDGACSGNGCCQLEIPSSLNYFEIQVSSLNNHINVSSFNPCGYAFVTEQHNFNFSSNYITNFPQNKISTVLDWAISNTTCVTADNKTNCICGSNSTKVDFVPDGSKYRCQCLEGYEGNPYLPQGCQDIDECKDKSLNDCRYECVNTIGNYTCNCPKNFKGDGRRGGEGCTRNTKSFLQIIIGVTLGFSVLVIGSTFLYLSYKKWRIFTKEELDKATNKYDESAVVGKGGFGTVYKRVLDDGSVVAIKKSKLVDQSQTSQFINEVIVLSQINHRNVVKLLGCCLETQVPLLVYEFITNGTLYDHIHDKANYDSLSWEVRLRIASETTGVISYLHSSASTPIIHRDIKTTNILLDHNYTAKVSDFGASKLVPMDQTQLSTLGQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVSFVGPEVERNLAMYMLCAMKEDRLVEVVEKGMATEANFEQIKEAAKLATKCLRIRGEERPSMKEVTMELEGLRSVSVEANKKLGSRGETMVGYLVQSDGSSESTSNQFVASGSTNVVDDSMKVEILPLIHQGR 722
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12641791 12644709 - Lsi08G004800.1 Lsi08g00480 668406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00480 722 Gene3D Phosphorylase Kinase; domain 1 369 463 - -
Lsi08g00480 722 ProSiteProfiles EGF-like domain profile. 296 330 IPR000742 -
Lsi08g00480 722 ProSitePatterns Serine/Threonine protein kinases active-site signature. 509 521 IPR008271 GO:0004672|GO:0006468
Lsi08g00480 722 SUPERFAMILY EGF/Laminin 295 331 - -
Lsi08g00480 722 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 312 323 IPR000152 -
Lsi08g00480 722 ProSiteProfiles Protein kinase domain profile. 388 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00480 722 Gene3D Transferase(Phosphotransferase) domain 1 464 678 - -
Lsi08g00480 722 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 21 375 IPR045274 GO:0007166
Lsi08g00480 722 CDD EGF_CA 296 330 - -
Lsi08g00480 722 Pfam Wall-associated receptor kinase galacturonan-binding 37 93 IPR025287 GO:0030247
Lsi08g00480 722 SMART egfca_6 296 339 IPR001881 GO:0005509
Lsi08g00480 722 Gene3D Plasmodium vivax P25 domain 229 344 - -
Lsi08g00480 722 CDD STKc_IRAK 394 661 - -
Lsi08g00480 722 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 374 663 IPR045274 GO:0007166
Lsi08g00480 722 SMART serkin_6 388 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00480 722 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 21 375 - -
Lsi08g00480 722 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 374 663 - -
Lsi08g00480 722 SUPERFAMILY Protein kinase-like (PK-like) 366 658 IPR011009 -
Lsi08g00480 722 Pfam Protein kinase domain 388 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00480 722 ProSitePatterns Calcium-binding EGF-like domain signature. 296 321 IPR018097 GO:0005509
Lsi08g00480 722 SMART egf_5 248 295 IPR000742 -
Lsi08g00480 722 SMART egf_5 299 339 IPR000742 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00480 Lsi-Chr8:12641791 Lsi08g00485 Lsi-Chr8:12691808 0 dispersed
Lsi08g00480 Lsi-Chr8:12641791 Lsi08g00481 Lsi-Chr8:12657509 7.80E-34 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83818 PF07714 PK_Tyr_Ser-Thr 1.10E-46 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00480 - - csv:101209870 1053.12