Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00482 ATGCAGTACGTAGCACAAGATTGTTATACACAAAATGGTCTCCGTAGTTCCCAGAATTTTCCCTATCTTAGTGTGCCCGCGTTCACCATTTTCAACACCAAGAACAAGTTCATGGTCATTGGCTGCGATACTTACGCTTATCTTTACGGTCCAGGGAGATCCTACAGAACTGCATGTGTGGCGTTGTGTGATGACATAACAAATGTAACCGATGGGAGTTGCTCAGGCAATGGGTGCTGTCAATTGGATATTCCCAGTGGCTTTAATTATTTGTCTTACCAGGTCAGCAGCTTTAAAAACCACAGTGAAGTCATGAGTTTTAATCCCTGTGGGGGAATCCGTATCTCCCTGACCAAGGTTGTCAAGATAAAAATGAATGCGAAGATGGGACCCATCAATGTGTACCGGAAGCTATATGTGACAACACACCAGCTGGAAACTATACTTGCAATTGTCCCAAGAACTTTGAAGGAGACGGAAGACTTGAGGGAACACGTTGCACTCCAAAGAATTCCCGCTCCATGTCCATTCAAATTATCATTGTTCTACTTCGGTTATAAGAAGTGGAAATTCATCCAACAGAAAGAGAAGTTTTTCAAGAAAAATGGAGGCTCCATGCTTCAACAACACCTTTCTCAGTGGCAATCACCTGCTGACACAGTCAGAATTTTCAGCCAAGAGGAATTAGAGAAAGCTACAAACAAATTCAACGAAAGCACAGTAGTAGGAAAAGGTGGCTATGGAACTGTTCACAACGGAGTCTTAGACGATGGTTCGGTTGTCGCCATTAAGAAATCACAATTAATTGACCAATCCCAAACTTCTCAATTCATTAACGAAGTCATTGTTTTGTCCCAAGTCAACCATCGCAACGTGGTCAAACTCTTAGGGTGTTGTTTGGAGACACAAGTTCCATTGTTGGTATACGAGTTCATCACCAACGGCACACTCTTTGACCACATCCATGACCGAACCAATTATTCTAACCATCTTTCCTGGGATGCTCGCTTGAAAATAGCTTCAGAAACTGCAGGGGTCATTTCATATTTGCATTCTTCAGCTTCTACTCCGATTATCCATAGAGATATCAAATCCACTAACATACTTTTGGACCATAATTTCACTACAAAGGTGTCAGATTTTGGGGCCTCGAAGTTAGTTCCAATGGATCAAACTCAGTTATCCACGATGGTGCAAGGGACTCTTGGATATTTGGACCCTGAATACTTGTTGACGAGTAAGTTGACGGAGAAGAGCGATGTATATAGCTTTGGAATAGTGCTTTTAGAGCTTATAACTGGAAAGAAGGCAGTGTGTTATGATGGACCGGAAGCGGAGAGGAATCTGGCCATGTATGTCCTTCGTGCAATGAAACAAGATCGTTTGGTAGAAGTTGTAGATGAGGGAATGATGACGGACGAAGGGAAGTTTAATCAAATAAAAGAAGTAGCAAAGATAGCCAAAGAGTGTGTGAGAGTGAAAGGAGAGGAGCGACCCAATATGAAAGAGGTGGCTATAGAATTAGAGGGACTTAGAGTTATGCATGTTCAACATTCATGGACTAACAACAATTTATCCAACTCAGAAGAGATGATAAGTTTATTGGATGAAACCTCAAATTCCATCGACCAGTTTCTTATGGACTTCGGAGCTTGGGTAAGAAAAATTGATGACTGA 1677 41.86 MQYVAQDCYTQNGLRSSQNFPYLSVPAFTIFNTKNKFMVIGCDTYAYLYGPGRSYRTACVALCDDITNVTDGSCSGNGCCQLDIPSGFNYLSYQVSSFKNHSEVMSFNPCGGIRISLTKVVKIKMNAKMGPINVYRKLYVTTHQLETILAIVPRTLKETEDLREHVALQRIPAPCPFKLSLFYFGYKKWKFIQQKEKFFKKNGGSMLQQHLSQWQSPADTVRIFSQEELEKATNKFNESTVVGKGGYGTVHNGVLDDGSVVAIKKSQLIDQSQTSQFINEVIVLSQVNHRNVVKLLGCCLETQVPLLVYEFITNGTLFDHIHDRTNYSNHLSWDARLKIASETAGVISYLHSSASTPIIHRDIKSTNILLDHNFTTKVSDFGASKLVPMDQTQLSTMVQGTLGYLDPEYLLTSKLTEKSDVYSFGIVLLELITGKKAVCYDGPEAERNLAMYVLRAMKQDRLVEVVDEGMMTDEGKFNQIKEVAKIAKECVRVKGEERPNMKEVAIELEGLRVMHVQHSWTNNNLSNSEEMISLLDETSNSIDQFLMDFGAWVRKIDD 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12664738 12667971 - Lsi08G004820.1 Lsi08g00482 668408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00482 558 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 182 533 IPR045274 GO:0007166
Lsi08g00482 558 ProSitePatterns Protein kinases ATP-binding region signature. 242 265 IPR017441 GO:0005524
Lsi08g00482 558 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 182 533 - -
Lsi08g00482 558 Gene3D Transferase(Phosphotransferase) domain 1 312 533 - -
Lsi08g00482 558 ProSitePatterns Serine/Threonine protein kinases active-site signature. 358 370 IPR008271 GO:0004672|GO:0006468
Lsi08g00482 558 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 18 104 - -
Lsi08g00482 558 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 18 104 IPR045274 GO:0007166
Lsi08g00482 558 Gene3D Phosphorylase Kinase; domain 1 208 311 - -
Lsi08g00482 558 SMART serkin_6 236 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00482 558 SUPERFAMILY Protein kinase-like (PK-like) 215 508 IPR011009 -
Lsi08g00482 558 Pfam Protein tyrosine and serine/threonine kinase 240 506 IPR001245 GO:0004672|GO:0006468
Lsi08g00482 558 CDD STKc_IRAK 242 511 - -
Lsi08g00482 558 ProSiteProfiles Protein kinase domain profile. 236 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00482 Lsi-Chr8:12664738 Lsi08g00484 Lsi-Chr8:12676750 0 dispersed
Lsi08g00488 Lsi-Chr8:12765434 Lsi08g00482 Lsi-Chr8:12664738 5.75E-102 dispersed
Lsi08g00481 Lsi-Chr8:12657509 Lsi08g00482 Lsi-Chr8:12664738 1.25E-31 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83819 PF07714 PK_Tyr_Ser-Thr 1.10E-46 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00482 - - csv:101205932 783.867