Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00484 ATGAGTTCCAAATTAAAAATGGGACGTGGAAGGGATGAGGTTGTTGTTGTGGCAGTATTGAATTACATAGCCATAATCTTTTCATGGGCTTTTATTGCAGTAGTATCAGCAGCAGCTTCTCAAGCCCTACTCGGGTGTGAAAATAAATGTGGGAACTTGGAAATTCCATATCCATTTGGATTGAAGGAAGGGTGTTATTTGGATGACACTTTCTTGATCACCTGCAATAAAACTCATTATCATCCGCCAAAGCCATTTCTACGACGCGGCAACATCGAAGTAACCGATATATCAATCCTCTCCGGTGAGCTCCAGATCTTGCAGTACGTAGCACAGGATTGCTACACACAAAATGGTGACCGTAAATCCAACAATCCCTATCTTAATGTGACCTCCAAATTCACCATTTCCAACACAAAGAACAAGTTCATCGTCATTGGCTGCGACACTTACGCTTATCTTTACGGTCCAGGAAGATCTTACAGAACTGCATGTGTGGCGTTGTGTGATAACATTGCAACTGTAACCAACGGGAGTTGCTTAGGCTATGGGTGCTGTGAATTGGATATTCCCAATGGCCTACATTACTTGGATTACCAAGTCAGTAGCTTCAAAAATCACAGTGAAGTCATGAGTTTTAATCCCTGTGGGTATGCCTTTATAATTGAACAAAACAACTTCAATTTCTCCTCCACATATATTAGAAATTTTACACAAGAGAAAGTTCCGATGGTGATTGATTGGGGTATTAAAAATGATACTTGCTTAACACCTCACAATAAAACCAATTGCAATATAGATTGTGGACCAAACGCCATAAAAGATAGTAGCTTCTCTCTTGATGGATCTCAACATCGTTGCAAGTGCTTGGATGCCATGAGTGTGAATCAAAAGAGCAATGTGTTAACAAGCCGGGAAATTATACCTGCATTTGTCTTGAGAATTATAAAGGAGATGGTAGACGTTGGGGAAAAGGTTGCACCCCAAACTCCAAGTCTTTCATCCAGCATTGGGGTGGGGCTCACAACTTTAGTAATTGGTATTACATGTTTATACTTGTGTTACAAAAAGTGGAAGTTCATCCAACAAAAGCAGAAGTTTTTCAAAAACAACGGAGGCTTAATACTTCAACAACATCTTTCTCAATGGCAATCACCCACAGATATGATAAAAATTTTCACCCAAACAGAATTAGAGAAGGCTACAAACAAGTTCGATGAAAGTGTAGTGATTGGAAAAGGTGGCCATGCTATTGTTTTCAAAGGAGTGTTGGAGGATGGTTTGGTTGTTGCAATCAAGAGATCAAAATTCATGGATCAGTCTCAAATATCCCAATTCATTAACGAAGTCATAATTTTGTCCCAAATCAATCATCGTCATGTGGTGAAGCTCTTGGGTTGTTGTTTGGAGACGCAAGTTCCATTATTAGTGTATGAGTTCATTACAAATGGTACACTCTTTGACCACATTCATGATAGAACTAAACACAATTCTCTTTCATGGGAAACTCGTTTGAAAATAGCTTCAGAAACTGCGAGTGTAGTTTCATATTTGCATTCATCAGCTTCTACTCCAATTATCCATAGAGATATCAAGTCCACTAATATACTTTTAGATAATAGTTACACTACAAAGGTGTCTGATTTTGGTGCGTCGAAGTTTTTTCCGATGGACCAAACTCAAATATCCACGATAGTGCAAGGGACTCTTGGGTATTTGGATCCTGAATATTTGTCGACGAGTAAGTTGACGGAGAAAAGCGATGTGTATAGCTTTGGGATCGTGCTTTTGGAGCTTATAACTGGGAAGAAGGCAGCGAGTTTTAATGGACCAGAGATAGAGAGGAATCTAGCCATGTACGTACTTTGTGTAATGAAAGAAGACCGGTTAGTAGAAATTGTGGAGAAAGGAATGGCGACAGAAGGAAACATTGAGCAAATAAAAGAAGTGGCAAAATTGGCAAAAGAGTGTGTGAGAGTAAAAGGGGAGGAGCGGCCCACCATGAAGAAGGTAGCTATGGAGTTGGAGGGACTGAGAGCTGTGAGAACAGTACAGGTTGAGCATTCATGGGCTAATAATAACAACTTATCTAACACAAAAGAGAGGGATAAAAGAGAGAATGTGATATACTCATATGAGATTTTGTAA 2148 39.53 MSSKLKMGRGRDEVVVVAVLNYIAIIFSWAFIAVVSAAASQALLGCENKCGNLEIPYPFGLKEGCYLDDTFLITCNKTHYHPPKPFLRRGNIEVTDISILSGELQILQYVAQDCYTQNGDRKSNNPYLNVTSKFTISNTKNKFIVIGCDTYAYLYGPGRSYRTACVALCDNIATVTNGSCLGYGCCELDIPNGLHYLDYQVSSFKNHSEVMSFNPCGYAFIIEQNNFNFSSTYIRNFTQEKVPMVIDWGIKNDTCLTPHNKTNCNIDCGPNAIKDSSFSLDGSQHRCKCLDAMSVNQKSNVLTSREIIPAFVLRIIKEMVDVGEKVAPQTPSLSSSIGVGLTTLVIGITCLYLCYKKWKFIQQKQKFFKNNGGLILQQHLSQWQSPTDMIKIFTQTELEKATNKFDESVVIGKGGHAIVFKGVLEDGLVVAIKRSKFMDQSQISQFINEVIILSQINHRHVVKLLGCCLETQVPLLVYEFITNGTLFDHIHDRTKHNSLSWETRLKIASETASVVSYLHSSASTPIIHRDIKSTNILLDNSYTTKVSDFGASKFFPMDQTQISTIVQGTLGYLDPEYLSTSKLTEKSDVYSFGIVLLELITGKKAASFNGPEIERNLAMYVLCVMKEDRLVEIVEKGMATEGNIEQIKEVAKLAKECVRVKGEERPTMKKVAMELEGLRAVRTVQVEHSWANNNNLSNTKERDKRENVIYSYEIL 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12676750 12689622 - Lsi08G004840.1 Lsi08g00484 668410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00484 715 Gene3D Transferase(Phosphotransferase) domain 1 481 704 - -
Lsi08g00484 715 Pfam Protein tyrosine and serine/threonine kinase 410 675 IPR001245 GO:0004672|GO:0006468
Lsi08g00484 715 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 30 296 - -
Lsi08g00484 715 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 332 696 IPR045274 GO:0007166
Lsi08g00484 715 SUPERFAMILY Protein kinase-like (PK-like) 383 675 IPR011009 -
Lsi08g00484 715 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 332 696 - -
Lsi08g00484 715 Gene3D Phosphorylase Kinase; domain 1 377 480 - -
Lsi08g00484 715 SMART serkin_6 405 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00484 715 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 30 296 IPR045274 GO:0007166
Lsi08g00484 715 ProSitePatterns Protein kinases ATP-binding region signature. 411 433 IPR017441 GO:0005524
Lsi08g00484 715 CDD STKc_IRAK 411 678 - -
Lsi08g00484 715 ProSiteProfiles Protein kinase domain profile. 405 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00484 715 ProSitePatterns Serine/Threonine protein kinases active-site signature. 526 538 IPR008271 GO:0004672|GO:0006468
Lsi08g00484 715 Pfam Wall-associated receptor kinase galacturonan-binding 46 106 IPR025287 GO:0030247
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00482 Lsi-Chr8:12664738 Lsi08g00484 Lsi-Chr8:12676750 0 dispersed
Lsi08g00484 Lsi-Chr8:12676750 Lsi08g00486 Lsi-Chr8:12709942 0 dispersed
Lsi08g00499 Lsi-Chr8:12863805 Lsi08g00484 Lsi-Chr8:12676750 2.50E-60 dispersed
Lsi08g00483 Lsi-Chr8:12667975 Lsi08g00484 Lsi-Chr8:12676750 2.68E-29 tandem
Lsi08g00484 Lsi-Chr8:12676750 Lsi08g00485 Lsi-Chr8:12691808 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83820 PF07714 PK_Tyr_Ser-Thr 2.90E-46 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00484 - - cmos:111461403 842.032