Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00485 ATGGGGCGTCCAAACAAGACGCTTATTCAACTCACAACGGTGAAAATAATAGCCATCTTATCAGCAGTTTTTGTCGTCGTAGCGGCCACGACGAACACGACCGTGACAGTAGCTTCTAAAGCCTTACCCGGGTGCGACGAATGGTGTGGCAACGTGCAGATTCCATATCCGTTCGGGACGAGGGAAGGGTGTTATCTAAATGAAACGTTTTTGATTATGTGTAACACAACTCGTCCAGAATCTCCTAAGGCACTTCTAGGGACCACCAACATTATTGTTACAAATATATCCATCTCGGGGGAGCTCCAAATCTTGAACTTGGTGACCCAAGATTGCCAGCCTCCAAAGATTGGTCCCGATGTTTTTTCCTCTGTCTTTCTCGGTATACCTTCCTACACTATTTCCAAAACCAAAAACAAGTTCATCGCGATCGGCTGCGATACGTTCGCTGGTATTTTCGGCCGTGACTCAGAAGGGCAAACCTTTAGAACTGCATGTGTGGCGTTGTGTGATGACATTCAGTCGGTAAAAGATGGGGCTTGCTCTGGCAATGGGTGTTGTCAGTTGGAGATTCCGAGCAACCTTAATTATTTGGAGTTCACTGTCAGCAGCTTAAACAATCGCGTTAATGTGTCGAGTTTTAATCCTTGTGGGTATGCTTTTCTAATTGAACAAAACAACTTCAACTTCTCTTCAAAGTACATACAAAATTTCCCTGAAAACAGAGTTTTGGCTGTGCTTGATTGGGCCATTAGTAACACTACTTGCGGAACGGCTGAGAACAAAACTAATTGTATATGTGGCTCAAATAGCACCAAGGTTAACTTGCTTGATGATCCATCTCAATATCGTTGCCAATGCTCGGAAGGCTTTGAGGGGAATCCGTATCTCCTCCAAGGTTGTCAAGGAAACTATACTTGCAATTGTCCAAAGAACTTCAAAGGAGATGGAAGACGTAGGGGAGAAGGTTGCACTCCAAACTCCAAGTCTTTTGTTCAAATCATTGTTGGAGTTACTGTGGGGTTTACAGTTTTAGTAATTGGGAGTACATGGTTATACTTGGGTTACAGAAAGTGGAAGTTCATTCAACTGAAAGAGAAGTTTTTTGAGAAAAATGGTGGTTTGATGCTTCAACAACATCTTTCTCAATGGCAAACATCCACTGACATGGTCAGAATTTTCACCCAAGAAGAGCTTGACAAGGCAACAAACAAGTACGACGAAAGTGCGGTGGTCGGAAAAGGTGGCTACGGTACTGTTTACAAAGGAGTTTTAGACGATGGTTTGGTCGTTGCAATTAAGAAATCAAAATTAATAGACCAATCTCAAACTTCTCAATTCATTAACGAAGTCATCGTTTTGTCTCAAATCAACCACCGTAATGTGGTTAAGCTCTTAGGATGTTGTCTAGAAACACAAGTTCCATTGTTGGTGTATGAGTTCATCACCAACGGCACACTCTACGAATATGTACATGATAAAACCAATGATCGTGATTCTCTTTCATGGGAAGCTCGTTTGAGAATAGCTTCGGAAACTGCAGAGGTGATTTCATATTTGCATTCTTCAGCTTCCACTCCAATTATCCATAGAGATATCAAGACAACCAACATACTTTTAGATCATAATTTCACTGCAAAGGTATCTGATTTCGGTGCTTCCAAGTTGGTTCCAGTGGATCAAACCCAACTATCCACAATGGTACAAGGGACTCTTGGATATTTAGATCCAGAATACTTGTTGACAAGTGAGTTGACGGAGAAGAGCGATGTGTATAGCTTTGGAATAGTACTTCTAGAGCTTATAACTGGGAAGAAGGCAGTGAGTTTCGAGGGTCCAGAAGCAGAGAGGAACCTAGCCATGTATGTGCTGTGTGCAGTGAAGGAAGATCGTTTGGCAGAAGTTGTGGAAAGGGGAATGGCAACGGAAGGGAACTTTGAGCAGATAAAAGAAGCGGCGAAGTTAGCAATAAAGTGTTTGAGAATAAGGGGGGAGGAACGACCAACCATGAAGGAGGTGGCCATGGAGTTGGAAGGGCTTAGAGGGTTGAATGAGGCTAATGAGAAATTAGAGACCAGAGGAGAAGCGATGTTAGGTTATTTGGTGCAAACCGAATCCACATCCAACCAGTTTATTGCGAGTGGGAGCACAAATGTTGTGGATGATAGTATGAAGGTTCACATTTTGCCACTTATTCATAATGGAAGATGA 2211 42.7 MGRPNKTLIQLTTVKIIAILSAVFVVVAATTNTTVTVASKALPGCDEWCGNVQIPYPFGTREGCYLNETFLIMCNTTRPESPKALLGTTNIIVTNISISGELQILNLVTQDCQPPKIGPDVFSSVFLGIPSYTISKTKNKFIAIGCDTFAGIFGRDSEGQTFRTACVALCDDIQSVKDGACSGNGCCQLEIPSNLNYLEFTVSSLNNRVNVSSFNPCGYAFLIEQNNFNFSSKYIQNFPENRVLAVLDWAISNTTCGTAENKTNCICGSNSTKVNLLDDPSQYRCQCSEGFEGNPYLLQGCQGNYTCNCPKNFKGDGRRRGEGCTPNSKSFVQIIVGVTVGFTVLVIGSTWLYLGYRKWKFIQLKEKFFEKNGGLMLQQHLSQWQTSTDMVRIFTQEELDKATNKYDESAVVGKGGYGTVYKGVLDDGLVVAIKKSKLIDQSQTSQFINEVIVLSQINHRNVVKLLGCCLETQVPLLVYEFITNGTLYEYVHDKTNDRDSLSWEARLRIASETAEVISYLHSSASTPIIHRDIKTTNILLDHNFTAKVSDFGASKLVPVDQTQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVSFEGPEAERNLAMYVLCAVKEDRLAEVVERGMATEGNFEQIKEAAKLAIKCLRIRGEERPTMKEVAMELEGLRGLNEANEKLETRGEAMLGYLVQTESTSNQFIASGSTNVVDDSMKVHILPLIHNGR 736
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12691808 12694619 - Lsi08G004850.1 Lsi08g00485 668411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00485 736 Pfam Protein tyrosine and serine/threonine kinase 411 677 IPR001245 GO:0004672|GO:0006468
Lsi08g00485 736 ProSitePatterns Protein kinases ATP-binding region signature. 412 435 IPR017441 GO:0005524
Lsi08g00485 736 Gene3D Transferase(Phosphotransferase) domain 1 482 699 - -
Lsi08g00485 736 ProSiteProfiles Protein kinase domain profile. 406 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00485 736 ProSitePatterns Serine/Threonine protein kinases active-site signature. 528 540 IPR008271 GO:0004672|GO:0006468
Lsi08g00485 736 Gene3D Phosphorylase Kinase; domain 1 377 481 - -
Lsi08g00485 736 CDD STKc_IRAK 412 680 - -
Lsi08g00485 736 SUPERFAMILY Protein kinase-like (PK-like) 384 677 IPR011009 -
Lsi08g00485 736 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 33 683 IPR045274 GO:0007166
Lsi08g00485 736 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 33 683 - -
Lsi08g00485 736 SMART serkin_6 406 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00485 736 Pfam Wall-associated receptor kinase galacturonan-binding 45 100 IPR025287 GO:0030247
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01453 Lsi-Chr1:12657490 Lsi08g00485 Lsi-Chr8:12691808 1.12E-91 dispersed
Lsi06g00742 Lsi-Chr6:13371424 Lsi08g00485 Lsi-Chr8:12691808 6.10E-120 dispersed
Lsi08g00480 Lsi-Chr8:12641791 Lsi08g00485 Lsi-Chr8:12691808 0 dispersed
Lsi08g00485 Lsi-Chr8:12691808 Lsi08g00489 Lsi-Chr8:12774630 3.63E-42 dispersed
Lsi11g00994 Lsi-Chr11:16665270 Lsi08g00485 Lsi-Chr8:12691808 7.51E-161 dispersed
Lsi08g00484 Lsi-Chr8:12676750 Lsi08g00485 Lsi-Chr8:12691808 0 tandem
Lsi08g00485 Lsi-Chr8:12691808 Lsi08g00486 Lsi-Chr8:12709942 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83821 PF07714 PK_Tyr_Ser-Thr 9.30E-48 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00485 - - csv:101209870 1125.15