Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00486 ATGGGACGTCCAACCGGCGAGACGCTTGTGCGACTCATCATGGTGGTTAACATAGCTATCGTTTCAGCAATGGCCGCGGAGATGGTGGCGGCATCCGTACCTTCTCAAGCCAAACCCGAGTGTGAAAGTAAGTGTGGGAACGTGGAAATTCCATATCCGTTCGGGATGAAGGAAGGGTGTTATCTCAACATTAACTTCTCTATCACCTGCAACGAAACTCATTATAATCCTCCAAAGCCATTTCTAATGGACAGCTCCATTGAAGTAACCAATATATCAATCCTCTCCGGAGAGCTCCAGATCATGCAGTACGTAGCACAAGATTGTTATACACAAAATGGTCTCCGTAGTTCCCAGAATTTTCCCTCTCTTAGTGTGCCCGCGTTCACCATTTCCAACACCAAGAACAAGTTCATGGTCATTGGCTGCGATACTTACGCTTATCTTTACGGTCCAGGGAGATCCTACAGAACTGCATGTGTGGCGTTGTGTGATGACATAACAAATATAACCGATGGGAGTTGCTCAGGCAATGGGTGCTGTCAATTGGATATTCCCAGTGGCTTTAATTATTTGTCTTACCAGGTCAGCAGCTTTAAAAATCACAGTGAAGTCATGAGTTTTAATCCCTGTGGGTATGCCTTTATAATTGAACGAAACAACTTCAATTTCTTCCCCACATATATTCAAAATTTTGCACAAGAGAAAGTTCCGATGATGATTGATTGGGGCATTAGAAATGATACTTGCTTAACACCTCACAATAAAACCAATTGCAATATAGATTGTGGACCAAACGCCATAAAAGATAATAGCTTCTCTGTTGATGGATCTCAACATCGTTGCAAGTGCTTCGATGGTTTTCAGGAGAATCCGTATCTCCCTGACCAAGGTTGTCAAGATAAAAATGAATGCGAAGATGGGACCCATCAATGTGTACCCAAAGCTACATGTGTTAACACACCAGCTGGAAACTATACCTGCAATTGTCCCAATAACTTTGAAGGAGACGGAAGACTTGAGGGAACACGTTGCACTCCAAAGCACTCCCGCTCCATGTCCATTCAAATTATCATTGGAATTGGTGTTGGGTTCGTAGTTTTACTGATTGGTATCTCATGGTTCTACTTGGGTTACAAGAAGTGGAAATTCATCCAACAGAAAGAGAAGTTTTTCAAGAAAAATGGAGGCTCTATGCTTCAACAACACCTTTCTCAGTGGCAATCACCTGCTGACACAGTCAGAATTTTCAGCCAAGAGGAATTAGAGAAAGCTACAAACAAATTCAATGAAAGCACAGTGGTGGGAAAAGGTGGCTTTGGAACTGTTCACAAAGGAGTCTTAAACGATGGTTCGGTTGTCGCCATTAAGAAATCACAATTAATGGACCAATCCCAAACTTCTCAATTCATTAACGAAGTCATTGTTTTGTCCCAAGTCAACCATCGCAACGTGGTCAAACTCTTAGGGTGTTGTTTGGAGACACAAGTTCCATTGTTGGTATATGAGTTCATCACCAACGGCACACTCTTTGACCACATCCATGACCGAACCAAGTATTCTGATCACCTTTCTTGGGAAGCTCGCTTGAGAATAGCTTCAGAAACTGCAGGGGTCATTTCGTATTTGCATTCTTCAGCTTCTACTCCAATTATCCACAGAGATATCAAATCCACTAATATAGTTTTGGACCATAATTTCACTGCAAATGTGGCAGATTTCGGCGCCTCAAAGTTAGTTCCAATGGATCAAACTCAGTTATCCACGATGGTGCAAGGGACTCTTGGATATTTGGACCCAGAATACTTGTTGACGAGTGAGTTGACGGAGAAGAGCGATGTGTATAGCTTTGGAATAGTGCTTCAAGAGCTTATAACTGGTAAAAAGGCAGTGTGTTTTGATGGGCCAGAAGTGGAGAGGAATCTTGCCATGTACGTCCTTCGTGCAATGAAAGAAGATCGTTTAGTAGAAATTGTGGATAAGGGAATGATGATGGACGAAGGGAAGTTGAATCAAATAAAAGAAATAGCAAAGATAGCCCAGGAGTGTGTGAGAGTGAAAGGAGAGGAGCGACCCAGTATGAAAGAGGTGGCTATGGAGTTAGAGGGGCTAAGAGTAATGCAGGTTCAACATTCATGGGCTAATAACAATTTATCCAGCTCAGAAGAGATGATAAGTTTATTGGATGAAACCTCAAATTACACCAATCAGTTTCTTGTCAGCAACAGTATCAATTCTATAGATAATAGTATAAACACTCAGATTTTGACAACACATATTCCGGATGCAAGATGA 2295 42.0 MGRPTGETLVRLIMVVNIAIVSAMAAEMVAASVPSQAKPECESKCGNVEIPYPFGMKEGCYLNINFSITCNETHYNPPKPFLMDSSIEVTNISILSGELQIMQYVAQDCYTQNGLRSSQNFPSLSVPAFTISNTKNKFMVIGCDTYAYLYGPGRSYRTACVALCDDITNITDGSCSGNGCCQLDIPSGFNYLSYQVSSFKNHSEVMSFNPCGYAFIIERNNFNFFPTYIQNFAQEKVPMMIDWGIRNDTCLTPHNKTNCNIDCGPNAIKDNSFSVDGSQHRCKCFDGFQENPYLPDQGCQDKNECEDGTHQCVPKATCVNTPAGNYTCNCPNNFEGDGRLEGTRCTPKHSRSMSIQIIIGIGVGFVVLLIGISWFYLGYKKWKFIQQKEKFFKKNGGSMLQQHLSQWQSPADTVRIFSQEELEKATNKFNESTVVGKGGFGTVHKGVLNDGSVVAIKKSQLMDQSQTSQFINEVIVLSQVNHRNVVKLLGCCLETQVPLLVYEFITNGTLFDHIHDRTKYSDHLSWEARLRIASETAGVISYLHSSASTPIIHRDIKSTNIVLDHNFTANVADFGASKLVPMDQTQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLQELITGKKAVCFDGPEVERNLAMYVLRAMKEDRLVEIVDKGMMMDEGKLNQIKEIAKIAQECVRVKGEERPSMKEVAMELEGLRVMQVQHSWANNNLSSSEEMISLLDETSNYTNQFLVSNSINSIDNSINTQILTTHIPDAR 764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12709942 12713025 + Lsi08G004860.1 Lsi08g00486 668412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00486 764 Gene3D Transferase(Phosphotransferase) domain 1 505 725 - -
Lsi08g00486 764 ProSitePatterns Serine/Threonine protein kinases active-site signature. 551 563 IPR008271 GO:0004672|GO:0006468
Lsi08g00486 764 Gene3D Phosphorylase Kinase; domain 1 401 504 - -
Lsi08g00486 764 SMART egf_5 304 346 IPR000742 -
Lsi08g00486 764 SMART egf_5 249 300 IPR000742 -
Lsi08g00486 764 ProSiteProfiles Protein kinase domain profile. 429 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00486 764 SMART egfca_6 301 346 IPR001881 GO:0005509
Lsi08g00486 764 SMART serkin_6 429 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00486 764 CDD STKc_IRAK 435 704 - -
Lsi08g00486 764 ProSiteProfiles EGF-like domain profile. 301 346 IPR000742 -
Lsi08g00486 764 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 23 728 - -
Lsi08g00486 764 SUPERFAMILY EGF/Laminin 299 338 - -
Lsi08g00486 764 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 23 728 IPR045274 GO:0007166
Lsi08g00486 764 Pfam EGF domain 305 339 IPR024731 -
Lsi08g00486 764 Pfam Wall-associated receptor kinase galacturonan-binding 41 101 IPR025287 GO:0030247
Lsi08g00486 764 CDD EGF_CA 301 337 - -
Lsi08g00486 764 Pfam Protein tyrosine and serine/threonine kinase 433 701 IPR001245 GO:0004672|GO:0006468
Lsi08g00486 764 ProSitePatterns Protein kinases ATP-binding region signature. 435 458 IPR017441 GO:0005524
Lsi08g00486 764 SUPERFAMILY Protein kinase-like (PK-like) 408 702 IPR011009 -
Lsi08g00486 764 Gene3D Laminin 291 346 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00483 Lsi-Chr8:12667975 Lsi08g00486 Lsi-Chr8:12709942 1.97E-50 dispersed
Lsi08g00484 Lsi-Chr8:12676750 Lsi08g00486 Lsi-Chr8:12709942 0 dispersed
Lsi08g00486 Lsi-Chr8:12709942 Lsi08g00489 Lsi-Chr8:12774630 1.96E-55 dispersed
Lsi08g00485 Lsi-Chr8:12691808 Lsi08g00486 Lsi-Chr8:12709942 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83822 PF07714 PK_Tyr_Ser-Thr 3.50E-46 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00486 - - cmos:111461403 939.873