Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00487 ATGGTCCCTCTTTTTAACCTCCCTTTTAACCTTAAGAGTAGGGCTTCCCAAGCCCCGGCTGCCAAAATGTGGGGCTTTTCCACTGCTCATTCTAATCGCTTTTCCTCAAAGCTGCCATGGAAGGAAACTTTCTCCTTTGGGTTTGACCATTGCAATAACAACTCCAATAATGAACCACCTGTTGTTGATTTCTTCTCTTCTACTTTAGGCAACGAATTTGAAGAAATAGGCTACCCAATTTGCGAACAAGCCGGCGTGGCCCTCGGCACTGGCCCTCACTGTGATCCAACAGCCTTGACTATCCTCCACCAGGATCAGGTCGGTGGCCTCGAAGTCTTCGCCAACAACAATTGGCATACCGTTCCCCCCTCTCCAAATTCACTCGTTGTTAACATTGGTGACGTCTTCATGGCACTGTGTAATGGAGAATACAAGAGCTGCGTGCACAGGGCGGTAGTGAACAAGCACAAGGAGAGGAGGTCATTGGCATTTTTCCTTTGTCCGAGGAAAGACAAGGTGGTGAGGCCACCGGAGAAACTTGTCGCCGATGACGGGTCGAGAAATTTCCCAGATTTTTGCTGGTCAGAGCTGTTTGAATTCACACAGAAACACTACAGAGCCGATGCTGTAACTCTTCAAAACTTCAGCAAATGGGTCGTGTCGTCGAGGCCATGTGGTGTTTAA 684 48.54 MVPLFNLPFNLKSRASQAPAAKMWGFSTAHSNRFSSKLPWKETFSFGFDHCNNNSNNEPPVVDFFSSTLGNEFEEIGYPICEQAGVALGTGPHCDPTALTILHQDQVGGLEVFANNNWHTVPPSPNSLVVNIGDVFMALCNGEYKSCVHRAVVNKHKERRSLAFFLCPRKDKVVRPPEKLVADDGSRNFPDFCWSELFEFTQKHYRADAVTLQNFSKWVVSSRPCGV 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12741948 12746711 + Lsi08G004870.1 Lsi08g00487 668413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00487 227 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 3 75 - -
Lsi08g00487 227 SUPERFAMILY Clavaminate synthase-like 3 207 - -
Lsi08g00487 227 Pfam 2OG-Fe(II) oxygenase superfamily 72 168 IPR044861 -
Lsi08g00487 227 Gene3D - 61 206 IPR027443 -
Lsi08g00487 227 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 64 168 IPR005123 -
Lsi08g00487 227 PANTHER GIBBERELLIN 20 OXIDASE 5 3 75 - -
Lsi08g00487 227 PANTHER GIBBERELLIN 20 OXIDASE 5 78 221 - -
Lsi08g00487 227 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 78 221 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00487 K05282 GA20ox; gibberellin-44 dioxygenase [EC:1.14.11.12] - csv:101209625 396.356
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00487 Lsi-Chr8:12741948 Lsi09g00562 Lsi-Chr9:5943825 3.29E-71 dispersed
Lsi08g00487 Lsi-Chr8:12741948 Lsi05g01281 Lsi-Chr5:20574515 4.03E-71 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g197 . . . . . Bpe04g00544 . . . . . . . . Sed01g0939 . . Bhi04g01851 Tan11g1219 Cmetu03g0027 . Hepe02g2737 . . Cla08g00640 Cam08g1059 Cec08g0644 Cco08g0755 Clacu08g0766 . Cre08g0572 . . . . . . . Cme03g00462 . . . . . . . . . . . . . . Car15g00590 . . . . . . . . . . . . . . . . Lsi08g00487 . Chy03g00549 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014001 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00487 Lsi_Chr08 FPKM 0.0 0.0 6.630673 7.205575 1.357919 1.520412 1.541275 0.0 0.0 0.0