Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00488 ATGGCTTCCACTCCAATTATCCATAGAGATATTAAGACGACCAACATACTTTTAGACGATAATTACACCGCGAAGGTGTCTGATTTCGGGGCGTCGAAGTTGGTTCTGATAGATCAAACACAGCTATCTACGATGGTGCAAGGAACTCTAGGGTATTTAGACCCGGAGTACTTGTTGACTAGCGAGTTAACGGAGAAGAGCGACGTGTATAGCTTTGGAATAGTGTTGTTAGAGCTTATAACTGGGAAGAAGGCGGTGTGTTTTGATGGGCCAGAAGCGGAGAGGAATCTAGCGATGTACGTGCTTTGTGCAATGAAGGAAGATCGATTGGAAGAAGTTGTGGAGAAGGGAATGATGGTGAAAGAGGCAAATTTTGAAGGAATAAAAGAAGCGGCTAAGATAGCAAAGAAGTGTTTAAGAATTAAAGGGGAAGAGCGACCCAGCATGAAGGAAGTGGCTATGGAGTTGGAGGGAGTGCGATTAAGGCAAGTTCAACATTCATGGGTTAATAACAATAATTTGTCCAACGCAGAGGAAATGTTCGACAAGTAG 552 43.48 MASTPIIHRDIKTTNILLDDNYTAKVSDFGASKLVLIDQTQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVCFDGPEAERNLAMYVLCAMKEDRLEEVVEKGMMVKEANFEGIKEAAKIAKKCLRIKGEERPSMKEVAMELEGVRLRQVQHSWVNNNNLSNAEEMFDK 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12765434 12774476 + Lsi08G004880.1 Lsi08g00488 668414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00488 183 Pfam Protein kinase domain 4 152 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00488 183 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 2 173 - -
Lsi08g00488 183 ProSiteProfiles Protein kinase domain profile. 1 169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00488 183 SUPERFAMILY Protein kinase-like (PK-like) 3 156 IPR011009 -
Lsi08g00488 183 ProSitePatterns Serine/Threonine protein kinases active-site signature. 6 18 IPR008271 GO:0004672|GO:0006468
Lsi08g00488 183 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 2 173 IPR045274 GO:0007166
Lsi08g00488 183 Gene3D Transferase(Phosphotransferase) domain 1 1 180 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00481 Lsi-Chr8:12657509 Lsi08g00488 Lsi-Chr8:12765434 3.48E-44 dispersed
Lsi08g00488 Lsi-Chr8:12765434 Lsi08g00482 Lsi-Chr8:12664738 5.75E-102 dispersed
Lsi08g00488 Lsi-Chr8:12765434 Lsi08g00489 Lsi-Chr8:12774630 4.71E-99 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83823 PF00069 Pkinase 1.80E-24 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00488 - - csv:101209380 313.538