Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00489 ATGAGGCGTTGGAGAAAGACGCTAATTGTGGGTCTCATTGTGCTCATAAAGATATCCATATTATCAACAGCCGTAGTAAAAGCTTCATCACAAGCCTTACCCGGCTGTGACGAATGGTGTGGTGACTTGCAAATTCCATATCCATTCGGAGTAAAACAAGAATGTTATCTCAACCAATCATTCTTAATTACATGCAACAAAGGCAAGGCGTTTGTAACGGATACCAACATTAGCGTTACCAAAATATCACTCGACGGTGAGCTCCATATGTTGCAGCCAATAGTGAGATATTGTTACGAGGAAGTGCAAGTAGGTGGTCCTTTTATCCCCAACGCAACCAATATCTCGGTGCCGGCGGTGTTTCCAATTGCTGATGGGAAAAACAAGTTCACGGCCATCGGGTGCAATACTTTTGGTTTATTCGGCGGGACTCTAGACGGAAGTGAATTTCTAAGTGGGTGTATTTCAGTTTGTTTAAATGAAAGTACTTTAGTTGATGGGTCTTGTTCTGGGAATGGGTGCTGTGAGTTGGAGATTCCAAATGGGTTAAGCAATTTGAGTTTGTTTGTGGGTCAACTCTTATCTAATCGCAGTTTTGTTAAGTATAATCCATGTGGGTATGCTTTTGTGGTTGGAGATGAGGGGTTCAATTTTAAGTCAACTTATATTGAGAATTTTGAAGATGAGGAAGTTGAGGTTGTGGTTAGTTGGGGCATTGGAAATGAAACAATAATTGATGTATGTGGACCAAACACCATAAGGAATAGTAGCTTCTCTAAGTATGGATCTGAATATCGTTGCCAATGTTTGGATGGTTTTCATGGTAATCCTTATCTTCCTCAAGGTTGTCAAGATAAAAATGAATGCGAAGATGGGACCCATCAATGTGTACCCAAAGCTACATGTGTTAACACACCAGCTGGAAACTATACCTGCAATTGTCCCAATAACTTTGAAGGAGACGGAAGACTTGAGGGAACACGTTGCACTCCAAAGCACTCCCGCTCCATGTCCATTCAAATTATCATTGGAATTGGTGTTGGGTTCGTAGTTTTACTGATTGGTATCTCATGGTTCTACTTGGGTTACAAGAAGTGGAAATTCATCCAACAGAAAGAGAAGTTTTTCAAGAAAAATGGAGGCTCTATGCTTCAACAACACCTTTCTCAGTGGCAATCACCTGCTGACACAGTCAAAATTTTCAGCCAAGAGGAATTAGAGAAAGCTACAAACAAATTCAATGAAAGCACAGTGGTGGGAAAAGGTGGCTTTGGAACTGTTCACAAAGGAGTCTTAGACGATGGTTCGGTTGTCGCCATTAAGAAATCACAATTAATGGACCAATCCCAAACTTCTCAATTCATTAACGAAGTCATTGTTTTGTCCCAAGTCAACCATCGCAACGTGGTCAAACTCTTAGGGTGTTGTTTGGAGACACAAGTTCCATTGTTGGTATACGAGTTCATCACCAACGGCACACTCTTTGACCACATCCATGACCGAACCAAGTATTCTGATCACCTTTCTTGGGAAGCTCGCTTGAGAATAGCATCAGAAACTGCAGGGGTCATTTCGTATTTGCATTCTTCAGCTTCTACTCCAATTATCCATAGAGATATCAAATCCACTAATATACTTTTGGACCATAATTTCACTGCAAAGGTGTCGGATTTCGGGGCCTCGAAGTTAGTTCCAATGGATCAAACTCAGTTATCCACGATGGTGCAAGGGACTCTTGGATATTTAGACCCAGAATACTTGTTGACGAGTGAGTTGACGGAGAAGAGCGATGTGTATAGCTTTGGGATAGTGCTATTAGAGCTTATAACTGGGAAGAAGGCAGTGTGTTATGATGGCCCGGAAGCGGAGAGGAATCTAGCCATGTATGTCCTTCGTGCAATAAAACAAGATCGTTTAGTAGAAGTTGTGGATAAGGGAATGATGACAGATGAAGGGAAGTTGAATCAAATAAAAGAAGTAGCAAAGATAGCGAAAGAGTGTGTGAGAGTGAAAGGAGAGGAGCGACCCAATATGAAAGAGGTGGCTATGGAGTTAGAGGGACTTAGAGTTACGCATGTTCAACATTCATGGACTAACAACAATTTATCCAACTCAGAAGAGATGATAACAGCGGCATCACCGGACTGCGACGAACGACGGTGTGGGAACATGGAAATTCCATATCCATTCGGCACAAAGGAAGGGTGTTATCTAAGTGAGACTTTCTTGATCACCTGCAACAAAACTCATCATCCTCCAAGAGCATTTCTCGGCGATGGCAACGTCGATGTAACGAATATATCAATCGACAACAGCGAGCTCGACATCTCGTTTTTCGTAGCCAAAGATTGCTACACACAAAATGGTTCTCAGAATGGCAGTCATAACGTGGCCACACTTAAAACACCATTATTCACAATTTCCAACACCAAGAACAAGTTCGTCGCCATCGGCTGCGATACTCTAGCTCATATTTCTGGCAAAATCCAAGGGGATTCCTATAGAGGTGGGTGCATGGCGTTGTGTGGAAACACTACTACAACTATAAGAGATGGGCACTGCGCTGGCAATGGGTGCTGTGAGTTGGAAATTCCAGAAGGACTCAAATATTTGAAGTTAGAGGTGAATAGCTTCGACAAACACTCCGAGGATGTACAATAG 2661 42.31 MRRWRKTLIVGLIVLIKISILSTAVVKASSQALPGCDEWCGDLQIPYPFGVKQECYLNQSFLITCNKGKAFVTDTNISVTKISLDGELHMLQPIVRYCYEEVQVGGPFIPNATNISVPAVFPIADGKNKFTAIGCNTFGLFGGTLDGSEFLSGCISVCLNESTLVDGSCSGNGCCELEIPNGLSNLSLFVGQLLSNRSFVKYNPCGYAFVVGDEGFNFKSTYIENFEDEEVEVVVSWGIGNETIIDVCGPNTIRNSSFSKYGSEYRCQCLDGFHGNPYLPQGCQDKNECEDGTHQCVPKATCVNTPAGNYTCNCPNNFEGDGRLEGTRCTPKHSRSMSIQIIIGIGVGFVVLLIGISWFYLGYKKWKFIQQKEKFFKKNGGSMLQQHLSQWQSPADTVKIFSQEELEKATNKFNESTVVGKGGFGTVHKGVLDDGSVVAIKKSQLMDQSQTSQFINEVIVLSQVNHRNVVKLLGCCLETQVPLLVYEFITNGTLFDHIHDRTKYSDHLSWEARLRIASETAGVISYLHSSASTPIIHRDIKSTNILLDHNFTAKVSDFGASKLVPMDQTQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVCYDGPEAERNLAMYVLRAIKQDRLVEVVDKGMMTDEGKLNQIKEVAKIAKECVRVKGEERPNMKEVAMELEGLRVTHVQHSWTNNNLSNSEEMITAASPDCDERRCGNMEIPYPFGTKEGCYLSETFLITCNKTHHPPRAFLGDGNVDVTNISIDNSELDISFFVAKDCYTQNGSQNGSHNVATLKTPLFTISNTKNKFVAIGCDTLAHISGKIQGDSYRGGCMALCGNTTTTIRDGHCAGNGCCELEIPEGLKYLKLEVNSFDKHSEDVQ 886
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12774630 12793950 + Lsi08G004890.1 Lsi08g00489 668415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00489 886 Gene3D Transferase(Phosphotransferase) domain 1 489 711 - -
Lsi08g00489 886 SMART serkin_6 413 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00489 886 SUPERFAMILY Protein kinase-like (PK-like) 392 685 IPR011009 -
Lsi08g00489 886 Pfam EGF domain 289 323 IPR024731 -
Lsi08g00489 886 ProSitePatterns Serine/Threonine protein kinases active-site signature. 535 547 IPR008271 GO:0004672|GO:0006468
Lsi08g00489 886 SUPERFAMILY EGF/Laminin 283 322 - -
Lsi08g00489 886 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 15 704 - -
Lsi08g00489 886 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 708 877 - -
Lsi08g00489 886 Pfam Protein tyrosine and serine/threonine kinase 417 685 IPR001245 GO:0004672|GO:0006468
Lsi08g00489 886 Pfam Wall-associated receptor kinase galacturonan-binding 716 776 IPR025287 GO:0030247
Lsi08g00489 886 Pfam Wall-associated receptor kinase galacturonan-binding 36 86 IPR025287 GO:0030247
Lsi08g00489 886 CDD STKc_IRAK 419 688 - -
Lsi08g00489 886 ProSitePatterns Protein kinases ATP-binding region signature. 419 442 IPR017441 GO:0005524
Lsi08g00489 886 Gene3D Phosphorylase Kinase; domain 1 385 488 - -
Lsi08g00489 886 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 708 877 IPR045274 GO:0007166
Lsi08g00489 886 Gene3D Laminin 245 329 - -
Lsi08g00489 886 ProSiteProfiles EGF-like domain profile. 285 330 IPR000742 -
Lsi08g00489 886 CDD EGF_CA 285 321 - -
Lsi08g00489 886 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 15 704 IPR045274 GO:0007166
Lsi08g00489 886 ProSiteProfiles Protein kinase domain profile. 413 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00489 886 SMART egfca_6 285 330 IPR001881 GO:0005509
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01956 Lsi-Chr3:30959868 Lsi08g00489 Lsi-Chr8:12774630 8.00E-88 dispersed
Lsi08g00234 Lsi-Chr8:5154164 Lsi08g00489 Lsi-Chr8:12774630 8.42E-60 dispersed
Lsi08g00485 Lsi-Chr8:12691808 Lsi08g00489 Lsi-Chr8:12774630 3.63E-42 dispersed
Lsi08g00486 Lsi-Chr8:12709942 Lsi08g00489 Lsi-Chr8:12774630 1.96E-55 dispersed
Lsi08g00489 Lsi-Chr8:12774630 Lsi08g00492 Lsi-Chr8:12807446 1.66E-58 dispersed
Lsi08g00488 Lsi-Chr8:12765434 Lsi08g00489 Lsi-Chr8:12774630 4.71E-99 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83824 PF07714 PK_Tyr_Ser-Thr 5.50E-47 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00489 - - cmos:111461403 1019.61