Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00492 ATGAAACATGCGGAGGAGAAGCTTGTCTTGTTCATGCTGATCATCATGTTGTCCTCAGTAGCCTTAGCAACAGAAGCAGCGGCACCGGAGGATTGCGAGCGATGGTGTGGGAACTTGGAAATTCCATATCCATTTGGAATGAAAGAAAAATGTTATCTGAATGACAATTTCTCGATCACCTGCAACAAAACTCATTATGATCATCCTCCAAAAGCGTTTCTACGTGGCAGAGACGTTGAAGTAACTTATATATCAATCCACTCCAGCCAGCTCCACATCTTGAACAAGGTAGCCCGAGATTGCTACGAAAAAGACGGTCGTCCCGACATCAGCAGAGCCAAACTCAATCTTACAGTGGACATGTTCACAATTTCCAACACCAAGAACAAGTTTACTGTCGTCGGTTGCGATACTCACGGTTATCTTGAAGGCCAACTCCAGGGGGAACCTTACTTAAGTGGGTGCATGGCGTTGTGTGGAAACAGTAGTAGAACTATAAAAGATGGGTCCTGCTCTGGGCGTGGGTGCTGTCAGTTGGAGATTCCTGAAGACCTACAAGAAATAGTGTTGGAGGTTAAAAGTTTCGAAAATCATACTGAGCTTGAATCCCTGTGGGTATGCTTTTGTCGGAACTTCACAGATGAAGTTCCAGTGGTGCTTAACTGGGGCATAAAAAATGATACTTGCCAAATGCCTAACAATGACACACACAATTGCCTATGTGGACCAAACAGCAAAAAGATTAGTAGCTCATCCCTTGATGACTCTGAATATTATTGTAAGTGCTTGGATGGTTTCCGTGGAAATCCTTATCTCCCTCAAGGTTGTCAAGGAATTGCTGTGGGTCTTTTAGTTTTAGGGATTGGCAGTATATGGTCATACTTGGCTTACAAAAAGTGGAGGTTAATCCAACAAAAAGAGAAGTTTTTTAAGAAAAATGGAGGCTTGGTTCTTCAACAACATCTTTCTCAATGGCAATCATCCACTGACATGCTTACAATTTTCACTCGTGAAGAGTTAGAGAAATCAACAAACAACTTCGATGAAAGCGTGGTGGTTGGCAAAGGTGGGTACGGTACCGTTTACAAAGGAGTCTTAACCAATGGTTCTATAATCGCAATCAAGAAATCAAAATTGGTAGACCAATCTCAAACTAACCAATTCATTAACGAAGTCATCATTTTGTCCCAAATCAACCATCGCAACGTTGTCAAACTCTTAGGTTGTTGTTTGGAGACACGTGTTCCATTGTTAGTGTACGAGTTCATCACAAATGGCACACTCTTCAAACATATCCATCACAAAACCAACCATTCTTTCCTTTCTTGGGAAACTCGTTTGAAAATAGCTTCTCAAACTGCCGGCGTCCTCTCCTACCTACATTCATCAGCTTCTACTCCCATTATCCATAGAGATATCAAGTCCACTAATATACTTTTAGACCATAATTACACTGCAAAACTCTCTGATTTCGGAGCTTCAAAGTTGGTTCCATTGGATCAAACTCAAATATCCACCGTGGTGCAAGGGACTCTTGGATATTTGGATCCAGAATACTTATTGACAAGTGAGTTAACGGAGAAAAGCGACGTATATAGCTTTGGAATTGTGCTTCTAGAGCTTATAACTGGGAAGAAGGCGGTGTGTTTTACGGGGCCTGAAGTTGAGAGAAATCTAGCCATGTACGTTCTATGTGCGATGAAAGAAGATCGTGTTGAGGAAATCGTGGAGAAGGAAATAATGGAGAAAGAAGGGGTCTTTTGGCAAATAAAAGAAGTGGCAAAGCTAGCAAAAGAGTGTGTGAGAGTAAAAGGGGAGGAGCGGCCCACCATGAAGGAGGTAGCTATGGAGTTGGAGAAGCTGCAAGTGATGCAGGTTGAGCATTTCCATTTGTTGGATGGAGCTTTGGACTCGACCTCAATTATTGGCTGTGACAGTATGAATAATAATGCTATGGACCATAGCATAAAGGCTTAG 1977 42.19 MKHAEEKLVLFMLIIMLSSVALATEAAAPEDCERWCGNLEIPYPFGMKEKCYLNDNFSITCNKTHYDHPPKAFLRGRDVEVTYISIHSSQLHILNKVARDCYEKDGRPDISRAKLNLTVDMFTISNTKNKFTVVGCDTHGYLEGQLQGEPYLSGCMALCGNSSRTIKDGSCSGRGCCQLEIPEDLQEIVLEVKSFENHTELESLWVCFCRNFTDEVPVVLNWGIKNDTCQMPNNDTHNCLCGPNSKKISSSSLDDSEYYCKCLDGFRGNPYLPQGCQGIAVGLLVLGIGSIWSYLAYKKWRLIQQKEKFFKKNGGLVLQQHLSQWQSSTDMLTIFTREELEKSTNNFDESVVVGKGGYGTVYKGVLTNGSIIAIKKSKLVDQSQTNQFINEVIILSQINHRNVVKLLGCCLETRVPLLVYEFITNGTLFKHIHHKTNHSFLSWETRLKIASQTAGVLSYLHSSASTPIIHRDIKSTNILLDHNYTAKLSDFGASKLVPLDQTQISTVVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVCFTGPEVERNLAMYVLCAMKEDRVEEIVEKEIMEKEGVFWQIKEVAKLAKECVRVKGEERPTMKEVAMELEKLQVMQVEHFHLLDGALDSTSIIGCDSMNNNAMDHSIKA 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12807446 12811271 + Lsi08G004920.1 Lsi08g00492 668418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00492 658 CDD STKc_IRAK 353 621 - -
Lsi08g00492 658 Pfam Protein kinase domain 349 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00492 658 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 16 279 IPR045274 GO:0007166
Lsi08g00492 658 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 278 629 IPR045274 GO:0007166
Lsi08g00492 658 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 16 279 - -
Lsi08g00492 658 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 278 629 - -
Lsi08g00492 658 Gene3D Transferase(Phosphotransferase) domain 1 423 633 - -
Lsi08g00492 658 SUPERFAMILY Protein kinase-like (PK-like) 325 619 IPR011009 -
Lsi08g00492 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Lsi08g00492 658 SMART serkin_6 347 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00492 658 Gene3D Phosphorylase Kinase; domain 1 311 422 - -
Lsi08g00492 658 ProSitePatterns Protein kinases ATP-binding region signature. 353 376 IPR017441 GO:0005524
Lsi08g00492 658 Pfam Wall-associated receptor kinase galacturonan-binding 32 93 IPR025287 GO:0030247
Lsi08g00492 658 ProSiteProfiles Protein kinase domain profile. 347 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00489 Lsi-Chr8:12774630 Lsi08g00492 Lsi-Chr8:12807446 1.66E-58 dispersed
Lsi08g00492 Lsi-Chr8:12807446 Lsi08g00502 Lsi-Chr8:12934848 0 dispersed
Lsi08g00492 Lsi-Chr8:12807446 Lsi08g00495 Lsi-Chr8:12813208 1.14E-76 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83825 PF00069 Pkinase 2.80E-49 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00492 - - cmos:111461403 753.821