Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00495 ATGGCAACTCTGGACGTTGTGGCCACGGCGAAGGCGAAGGCGTTTACGGGCTGCGACGAACGGTGTGGGAACTTGAAAATTCCATATCCGTTCGGGATGAAGAAAGGGTGTTATCTCAACGAAGATTTCTCCATTACTTGCAACAAAACTCATTATCATCCACCAAAGGCATTTCTAAAAGACACCAACATTGATATCACCAATATATCCATAATCCAAGGCCAACTCCACATCTTGCAATTCGTAGCCAAAGATTGCTACACAAAAAATGGTCCTCGTGAATCCAACACACCCACACTCCAACTCCCCATGTTCACAATTTCCAACACCAACAACAAGTTCACTGTCATTGGCTGCGATACTTACGCTTATATTTCTGGTGAACTTGAGGGAGAATCCTACAAAAGTGGATGCATGGCGTTGTGTGGAAACAGTACTAAAACTATAAGAGATGGGTCTTGCTCTGGGAATGGGTGCTGTCAGTTGGAGATTCCTAAAGGCCTAAAATATTTAGAGTTGGAGGTGAGAAGCTTCAACAATCATAGTGAGGTACTCAAATTTAATCCATGTGGGTATGCTTTTGTAATCCAACAAGACAATTTCACTTTCTCCAAAAAATATATTCATAATTTTACACAAGAGGAAGTTCCATTGGTGCTTGATTGGGCCATCCAAACCAATACTTCTTGCTCAAAGGCTAAGATATATGTGGAACAAACACCAAATGGATTAACTTTCTTGATGATGGATCTGAATATCATTGCCAGTGTTTGGAAGGCTTTGAGGGAAATCCGTATCTCCCTCAAGGTTGCCAAGATGAATGCAAGAATGGAAGCCAGAAATGTAAATACAAAGAGTTGTGCGTTAACACACCAGGAAACTATACTTGTCATTGTCCTAAGAACCATAAAGGAGATGGCAGATATGGAGGAGAAGGCTGCATTCCAAACTCCATCTCTTCAATTCATATCATCATTGTGGAAATTTATTCAACAAAAGGAGAAGTTTTTTAAGAAAAATGGAGGTTTAATGCTTCAACAACATCTTTCACAATGGCAATCACCAGACATGTTCAAAATTTTCACCCAAGAAGAGTTGGAGAAGGCTACAAACAAATATAATGAAAGTGCAGTGGTTGGCAAAGGTGGTTATGGTATCGTTTACAAAGGAGTCTTAGACGACGGTTTGACAGTTGCAATCAAGAAATCAAAATTAGTGAACCAATCCCAAACTAACCAATTCATTAACGAAGTCATCGTTTTGTCCCAAATCAACCATCGCAACGTGGTCAAACTCATAGGGTGTTGTTTGGAGACAAAGGTTCCATTGTTGGTGTACGAGTTCGTAACCAACGGCACCCTCTTTGAACACATCCACCGCAAAACCAACCATACTTATCTTCCATGGGAAGCTCGCTTGAAAATAGCTTCGGAAATTGCAAGCGTCGTTTCATATTTGCATTCTTCCGCTTCTACTCCAATTATCCATAGAGATATCAAGTCCAATAATATACTTTTGGACCAAAACTACACAGCAAAGATCTCTGATTTCGGAACGTCAAAGCTTGTTCCGTTGGATCGAACTCAAATATCCACAATGGTGCAAGGGACTATTGGATATTTGGATCCAGAATATTTTTTGACGAGTGAGTTGACGGAGAAAAGCGATGTGTACAGCTTTGGAATTGTGCTTATGGAGCTTATAACGGGGAAGAAGGCGGTGTGTTTTGATGGGCCAGAAGAAGAGAGGAATCTAGCGATGTATGTGTTGTATGCAATGGAAGAAGATCGCGTGGAAGAAGTTTTGGAGTAG 1812 40.84 MATLDVVATAKAKAFTGCDERCGNLKIPYPFGMKKGCYLNEDFSITCNKTHYHPPKAFLKDTNIDITNISIIQGQLHILQFVAKDCYTKNGPRESNTPTLQLPMFTISNTNNKFTVIGCDTYAYISGELEGESYKSGCMALCGNSTKTIRDGSCSGNGCCQLEIPKGLKYLELEVRSFNNHSEVLKFNPCGYAFVIQQDNFTFSKKYIHNFTQEEVPLVLDWAIQTNTSCSKAKIYVEQTPNGLTFLMMDLNIIASVWKALREIRISLKVAKMNARMEARNVNTKSCALTHQETILVIVLRTIKEMADMEEKAAFQTPSLQFISSLWKFIQQKEKFFKKNGGLMLQQHLSQWQSPDMFKIFTQEELEKATNKYNESAVVGKGGYGIVYKGVLDDGLTVAIKKSKLVNQSQTNQFINEVIVLSQINHRNVVKLIGCCLETKVPLLVYEFVTNGTLFEHIHRKTNHTYLPWEARLKIASEIASVVSYLHSSASTPIIHRDIKSNNILLDQNYTAKISDFGTSKLVPLDRTQISTMVQGTIGYLDPEYFLTSELTEKSDVYSFGIVLMELITGKKAVCFDGPEEERNLAMYVLYAMEEDRVEEVLE 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12813208 12819788 + Lsi08G004950.1 Lsi08g00495 668421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00495 603 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 9 229 - -
Lsi08g00495 603 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 327 603 - -
Lsi08g00495 603 Gene3D Transferase(Phosphotransferase) domain 1 449 603 - -
Lsi08g00495 603 Pfam Protein kinase domain 373 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00495 603 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 9 229 IPR045274 GO:0007166
Lsi08g00495 603 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 327 603 IPR045274 GO:0007166
Lsi08g00495 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 494 506 IPR008271 GO:0004672|GO:0006468
Lsi08g00495 603 SMART serkin_6 373 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00495 603 ProSiteProfiles Protein kinase domain profile. 373 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00495 603 Gene3D Phosphorylase Kinase; domain 1 345 448 - -
Lsi08g00495 603 ProSitePatterns Protein kinases ATP-binding region signature. 379 402 IPR017441 GO:0005524
Lsi08g00495 603 SUPERFAMILY Protein kinase-like (PK-like) 350 591 IPR011009 -
Lsi08g00495 603 CDD STKc_IRAK 379 603 - -
Lsi08g00495 603 Pfam Wall-associated receptor kinase galacturonan-binding 18 78 IPR025287 GO:0030247
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00495 Lsi-Chr8:12813208 Lsi08g00502 Lsi-Chr8:12934848 0 dispersed
Lsi11g00995 Lsi-Chr11:16678030 Lsi08g00495 Lsi-Chr8:12813208 7.12E-49 dispersed
Lsi08g00492 Lsi-Chr8:12807446 Lsi08g00495 Lsi-Chr8:12813208 1.14E-76 proximal
Lsi08g00495 Lsi-Chr8:12813208 Lsi08g00497 Lsi-Chr8:12840607 9.31E-127 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83826 PF00069 Pkinase 1.00E-45 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00495 - - csv:101205932 679.478