Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00497 ATGAGAAGTCTAGAAGAGAAACTTATTAAGCTCATAATTTTATCATCAGCAACTTTGTTTGTGGTGGCAGCAGCGGTGAAGGCGTCGTTTACAGGCTGCAACGAACAGTGTGGAAACTTGAAAATTCCATATCCGTTCGGGATCAAGGAAGGGTGTTATCATAACGAAAATTTCTCAATTACTTGCAACAAAACTCGTTATAATCCACCAAAAGCATTTCTAAAAGACACCGACATAGGTATCACCAATATATCCATAATCGAAGGCCAGCTCCCCATCTTGCAATCCATAGCCAAAGATTGCTACACAAAAAATGGTACTCCTGAATCCAACGATCCCACTTTCCAACTCTTCAATTTCACAATTTCCAACACCATGAACAAGTTCACAGTCATTGGCTGCGATACTTACGCTTTTATTTCTGGTGAACTTGAGGGAGAATCCTACATAAGTGGGTGCATGGCGTTATGTGGAAACAGTACTGAAACTATAAGAGATGGGTCGTGCTCTGGGAGTGGGTGCTGTCAGTTGGAGATTCCTAGAGGCCTAAAAAATTTGGACGTTGAGGTTAAAAGCTTCGACAATCATAGTAAGGTACTCAACTTCAATCCATGTGGGTATGCTTTTGTAATCCAACAAGACAAATTCAATTTCTCCACAAACTATATTCGTAATTTTACACAAAAGGAAGTTCCATTGGTGCTTGATTGGGCCATCCCAACCAATAAGTCTTGCTTAGAGCAGGCTAAGAACAAAAGCAATTGCAGTATATGTGGACTAAATACCAAAAGGATTAACTTTCTTGACGATGGATCTGAATATCGTTGCCAGTGTTTGGAAGGCTTTGAAGGAAATCCATATCTCCCTCAAGGTTGCCAAGATATAGATGAATGCAAGAATGGAAGCCAGAAATGTAAATACAAAGAGTTGTGCGTTAACACACCAGGAAACTATACTTGTCATTGTCCTAAGAACCATAAAGGAGATGGCAGATATGGAGGAGAAGGCTGCATTCCAAACTCCATCTCTTCAATTCATATCATCATTGTATTTGTGTTTGGCAGTATATGGTTATACTTGGGTTACAAAAAGTGGAAATTTATTCAACAAAAGGAGAAGTTCTTTAAGAAAAATGGAGGTTTAATGCTTCGGCAACATCTTTCTCAATGGCAATCACCAGACATGCTCAAAATTTTCACCCAAGAAGAGTTGGAGAAGGCTACAAACAAATATGACGAAAAAGCAGTGGTTGGCAAAGGTGGTTACGGTACCGTTTACAAAGGAGTCTTAGACAACGGTTTGACAGTTGCAATCAAGAAATCAAAATTAGTGAACCAGTCCCAAATTGATCAATTTATTAACGAAGTCAACGTTCTGTCCCAAATCAACCATCGCAACGTCGTCAAACTCATATGGTGTTGTTTGGAGACAAAGGTTCCATTGTTGGTGTACGAGCTCGTAACGAACGGCACACTTTTTGAACACATCCACCGCAAAACCAACCAAGTTTATCTTCCATGGGAAGCTCGCTTGAAAATAGCTTCGGAAATTGCCAGTGTAGTTTCATATTTGCATTCTTCCGCTTCTACTCCAATTATTCATAGAGATATCAAGTCCAGTAATATACTTTTGGACCAAAACTACACAGCAAAGATCTCTGATTTTGGAACGTCAAAGCTTGTTCCGTTGGATCGAACTCAAATATCCACAATGGTGCAAGGGACTATTGGATATTTGGATCCAGAATATTTTTTGACGAACGACGATGACAATATCGACAATACGAAAGATAAGGCAGTTGATCACAATAAAGCAATTCAAAAGTTA 1827 39.35 MRSLEEKLIKLIILSSATLFVVAAAVKASFTGCNEQCGNLKIPYPFGIKEGCYHNENFSITCNKTRYNPPKAFLKDTDIGITNISIIEGQLPILQSIAKDCYTKNGTPESNDPTFQLFNFTISNTMNKFTVIGCDTYAFISGELEGESYISGCMALCGNSTETIRDGSCSGSGCCQLEIPRGLKNLDVEVKSFDNHSKVLNFNPCGYAFVIQQDKFNFSTNYIRNFTQKEVPLVLDWAIPTNKSCLEQAKNKSNCSICGLNTKRINFLDDGSEYRCQCLEGFEGNPYLPQGCQDIDECKNGSQKCKYKELCVNTPGNYTCHCPKNHKGDGRYGGEGCIPNSISSIHIIIVFVFGSIWLYLGYKKWKFIQQKEKFFKKNGGLMLRQHLSQWQSPDMLKIFTQEELEKATNKYDEKAVVGKGGYGTVYKGVLDNGLTVAIKKSKLVNQSQIDQFINEVNVLSQINHRNVVKLIWCCLETKVPLLVYELVTNGTLFEHIHRKTNQVYLPWEARLKIASEIASVVSYLHSSASTPIIHRDIKSSNILLDQNYTAKISDFGTSKLVPLDRTQISTMVQGTIGYLDPEYFLTNDDDNIDNTKDKAVDHNKAIQKL 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12840607 12845993 + Lsi08G004970.1 Lsi08g00497 668423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00497 609 SUPERFAMILY Protein kinase-like (PK-like) 388 587 IPR011009 -
Lsi08g00497 609 Pfam Protein kinase domain 411 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00497 609 Gene3D Laminin 242 337 - -
Lsi08g00497 609 Gene3D Phosphorylase Kinase; domain 1 384 486 - -
Lsi08g00497 609 SUPERFAMILY EGF/Laminin 293 329 - -
Lsi08g00497 609 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 17 587 IPR045274 GO:0007166
Lsi08g00497 609 CDD EGF_CA 294 329 - -
Lsi08g00497 609 ProSitePatterns Protein kinases ATP-binding region signature. 417 440 IPR017441 GO:0005524
Lsi08g00497 609 SMART egf_5 297 338 IPR000742 -
Lsi08g00497 609 SMART egf_5 244 293 IPR000742 -
Lsi08g00497 609 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 17 587 - -
Lsi08g00497 609 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 311 322 IPR000152 -
Lsi08g00497 609 ProSiteProfiles EGF-like domain profile. 294 338 IPR000742 -
Lsi08g00497 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 532 544 IPR008271 GO:0004672|GO:0006468
Lsi08g00497 609 Pfam Wall-associated receptor kinase galacturonan-binding 33 86 IPR025287 GO:0030247
Lsi08g00497 609 Gene3D Transferase(Phosphotransferase) domain 1 487 601 - -
Lsi08g00497 609 Pfam Calcium-binding EGF domain 294 327 IPR001881 GO:0005509
Lsi08g00497 609 SMART serkin_6 411 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00497 609 ProSitePatterns Calcium-binding EGF-like domain signature. 294 320 IPR018097 GO:0005509
Lsi08g00497 609 ProSiteProfiles Protein kinase domain profile. 411 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00497 609 SMART egfca_6 294 338 IPR001881 GO:0005509
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00497 Lsi-Chr8:12840607 Lsi08g00502 Lsi-Chr8:12934848 0 dispersed
Lsi08g00495 Lsi-Chr8:12813208 Lsi08g00497 Lsi-Chr8:12840607 9.31E-127 proximal
Lsi08g00497 Lsi-Chr8:12840607 Lsi08g00499 Lsi-Chr8:12863805 9.83E-128 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83827 PF00069 Pkinase 4.80E-37 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00497 - - cmos:111461403 749.199